Browse Element(s) Details


OsAffx.573.1.S1_x_at

Description gb:XM_354023.1
DB_XREF= gi:35189479
TID=OsAffx.573.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g202301/11Uncharacterised protein family containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g20210Os.50289.1.S1_at11/114+11239821..11246802expressed protein
LOC_Os04g20220OsAffx.26078.1.S1_at11/114+11247793..11261590G1 to S phase transition protein 1 homolog, putative, expressed
LOC_Os04g20220Os.16925.1.S1_at10/114+11247793..11261590G1 to S phase transition protein 1 homolog, putative, expressed
LOC_Os04g20220OsAffx.26078.1.S1_s_at9/114+11247793..11261590G1 to S phase transition protein 1 homolog, putative, expressed
LOC_Os04g20220Os.16925.1.S2_at9/114+11247793..11261590G1 to S phase transition protein 1 homolog, putative, expressed
LOC_Os04g20220Os.39411.1.A1_at2/114+11247793..11261590G1 to S phase transition protein 1 homolog, putative, expressed
LOC_Os04g20230Os.20498.1.S1_at10/114+11265185..11269440Uncharacterised protein family containing protein, expressed
LOC_Os04g20230OsAffx.13883.1.S1_at8/114+11265185..11269440Uncharacterised protein family containing protein, expressed
LOC_Os04g20230OsAffx.573.1.S1_x_at1/114+11265185..11269440Uncharacterised protein family containing protein, expressed
LOC_Os04g20240OsAffx.27522.1.S1_x_at11/114+11272027..11273254retrotransposon protein, putative, unclassified
LOC_Os04g20240OsAffx.3613.1.S1_x_at1/114+11272027..11273254retrotransposon protein, putative, unclassified
LOC_Os04g20240OsAffx.3613.1.S1_at1/114+11272027..11273254retrotransposon protein, putative, unclassified
LOC_Os04g20249NANA4+11275990..11276633NA
LOC_Os04g20260OsAffx.13884.1.S1_at11/114+11284750..11286306UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os04g20270Os.2316.1.S1_a_at11/114+11291520..11303849Mono-ADP-ribosyltransferase sirtuin-6, putative, expressed
LOC_Os04g20270Os.40082.1.A1_x_at1/114+11291520..11303849Mono-ADP-ribosyltransferase sirtuin-6, putative, expressed
LOC_Os04g20270OsAffx.27348.1.A1_at1/114+11291520..11303849Mono-ADP-ribosyltransferase sirtuin-6, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.573.1.S1_x_at--105--3312Chr07:27169114..27169138 (25 bp)
CACACGGCCCCACGCGGTTTGAGGG
NONE
OsAffx.573.1.S1_x_at--608--8891NONE
TGAGGGTTCGAACCGGCGGTGGAAT
NONE
OsAffx.573.1.S1_x_at--972--10071NONE
TTCGAACCGGCGGTGGAATGACCTC
NONE
OsAffx.573.1.S1_x_at--1067--9331NONE
TCGAACCGGCGGTGGAATGACCTCG
NONE
OsAffx.573.1.S1_x_at--92--4111Chr07:27169625..27169767 (25 bp)
CGAACCGGCGGTGGAATGACCTCGT
NONE
OsAffx.573.1.S1_x_at--18--5451Chr07:27169748..27169768 (21 bp)
GAACCGGCGGTGGAATGACCTCGTT
NONE
OsAffx.573.1.S1_x_at--205--2631Chr07:27169748..27169769 (22 bp)
AACCGGCGGTGGAATGACCTCGTTG
NONE
OsAffx.573.1.S1_x_at--917--1771NONE
ACCGGCGGTGGAATGACCTCGTTGC
NONE
OsAffx.573.1.S1_x_at--254--4271Chr07:27169748..27169771 (24 bp)
CCGGCGGTGGAATGACCTCGTTGCC
NONE
OsAffx.573.1.S1_x_at--711--4671Chr07:27169750..27169774 (25 bp)
GCGGTGGAATGACCTCGTTGCCGGC
NONE
OsAffx.573.1.S1_x_at--110--9231Chr07:27169805..27169829 (25 bp)
TCCAGCGTCGCGTCCTTCATGCGGC
NONE
Target Sequence 
CACACGGCCCCACGCGGTTTGAGGGTTCGAACCGGCGGTGGAATGACCTCGTTGCCGGCGGCCTCGACCCGACCACCGTC
TTCCTCGTCTCCAGCGTCGCGTCCTTCATGCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.573.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis