Browse Element(s) Details


OsAffx.30455.1.S1_at

Description tigr:9638.m01642
TID=OsAffx.30455.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1999011/11hypothetical protein
LOC_Os04g201801/11GDSL-like Lipase/Acylhydrolase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g19950NANA10+9672099..9675214retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g19960OsAffx.20496.1.S1_at11/1110+9680684..9685874Beta-galactosidase precursor, putative, expressed
LOC_Os10g19960OsAffx.20496.1.S1_s_at11/1110+9680684..9685874Beta-galactosidase precursor, putative, expressed
LOC_Os10g19970NANA10+9691163..9691976expressed protein
LOC_Os10g19980NANA10+9694298..9695478hypothetical protein
LOC_Os10g19990OsAffx.30455.1.S1_at11/1110+9697120..9698348hypothetical protein
LOC_Os10g20000NANA10+9700997..9704129retrotransposon protein, putative, unclassified
LOC_Os10g20010NANA10+9704757..9705092retrotransposon protein, putative, unclassified
LOC_Os10g20020NANA10+9707140..9713864retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g20030NANA10+9716952..9721448retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30455.1.S1_at--702--8194Chr10:2677227..2677251 (25 bp)
GGAAGACTAACAGTGCTTACCACAA
NONE
OsAffx.30455.1.S1_at--654--2991Chr10:9697751..9697775 (25 bp)
AATGTTTTCAACCACCTTGATGCAA
LOC_Os10g19990
OsAffx.30455.1.S1_at--618--6311Chr10:9697733..9697757 (25 bp)
GATGCAAATAGTCGCAAACCCCTCC
LOC_Os10g19990
OsAffx.30455.1.S1_at--465--10153Chr04:11223816..11223835 (20 bp)
TATCTCCCCTTGCACGAATGCATCA
LOC_Os04g20180
OsAffx.30455.1.S1_at--420--5271Chr10:9697402..9697716 (25 bp)
GAATGCATCATTGGGACCTCATACA
LOC_Os10g19990
OsAffx.30455.1.S1_at--918--10591Chr10:9697349..9697373 (25 bp)
TTCTGGGTGTGACAACCATACTTAG
LOC_Os10g19990
OsAffx.30455.1.S1_at--703--2211Chr10:9697338..9697362 (25 bp)
ACAACCATACTTAGGCAGGAGCAGA
LOC_Os10g19990
OsAffx.30455.1.S1_at--82--1531Chr10:9697319..9697343 (25 bp)
AGCAGAGGTCTGATACAATCGGGAT
LOC_Os10g19990
OsAffx.30455.1.S1_at--565--9852Chr07:25140548..25140567 (20 bp)
TACAATCGGGATACCATATGAGAAG
NONE
OsAffx.30455.1.S1_at--181--6574Chr01:3538114..3538190 (25 bp)
GATTCTTAGAGGTCAACTTGGTCAA
NONE
OsAffx.30455.1.S1_at--889--6171Chr10:9697218..9697242 (25 bp)
GAGGAGTTGTGGTCCAAACGATCAA
LOC_Os10g19990
Target Sequence 
GGAAGACTAACAGTGCTTACCACAAAAAATGTTTTCAACCACCTTGATGCAAATAGTCGCAAACCCCTCCTTATCTCCCC
TTGCACGAATGCATCATTGGGACCTCATACACAAAATAGTCCAGAAATTTGGGCTAAATTTCTGGGTGTGACAACCATAC
TTAGGCAGGAGCAGAGGTCTGATACAATCGGGATACCATATGAGAAGGTGATGAGAGTCATGATTCTTAGAGGTCAACTT
GGTCAACGGTGGATCAGGACTACACTCAGGGAGGAGTTGTGGTCCAAACGATCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30455.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis