Browse Element(s) Details


Os.7985.1.S1_at

Description gb:AK058242.1
DB_XREF= gi:32968260
TID=Os.7985.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.7985 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-011-H04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-011-H04, full insert sequence.
FL= gb:AK058242.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1807011/11Omega-3 fatty acid desaturase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g18050OsAffx.28175.1.S1_s_at1/113+10036432..10037332Auxin responsive protein
LOC_Os03g18060Os.41695.5.S1_x_at7/113+10041768..10050708transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g18060Os.41695.15.S1_s_at5/113+10041768..10050708transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g18060Os.41695.3.S1_x_at3/113+10041768..10050708transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g18060Os.41695.4.S1_x_at3/113+10041768..10050708transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g18060Os.41695.2.S1_x_at2/113+10041768..10050708transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g18070Os.7985.1.S1_at11/113+10059323..10062418Omega-3 fatty acid desaturase, chloroplast precursor, putative, expressed
LOC_Os03g18080Os.9593.1.S1_at10/113+10069246..10076848Transmembrane protein G5p, putative, expressed
LOC_Os03g18090NANA3+10079572..10079991hypothetical protein
LOC_Os03g18100OsAffx.12909.1.S1_at11/113+10081065..10081754hypothetical protein
LOC_Os03g18110Os.51761.1.S1_at11/113+10085032..10087065expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006633biological_processfatty acid biosynthesis
GO:0006636biological_processfatty acid desaturation
GO:0009266biological_processresponse to temperature stimulus
GO:0005783cellular_componentendoplasmic reticulum
GO:0009507cellular_componentchloroplast
GO:0016720molecular_functiondelta12-fatty acid dehydrogenase activity
GO:0042389molecular_functionomega-3 fatty acid desaturase activity
GO:0045485molecular_functionomega-6 fatty acid desaturase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7985.1.S1_at--307--9211Chr03:10059650..10059674 (25 bp)
TCCACTTACTTGGTGTGCTAGCAAA
LOC_Os03g18070
Os.7985.1.S1_at--951--1351Chr03:10059626..10059650 (25 bp)
AGAGCTTAAACAGCGACCACTATGT
LOC_Os03g18070
Os.7985.1.S1_at--27--7451Chr03:10059582..10059606 (25 bp)
GTGTACTACCAAACTGACTTGAAAA
LOC_Os03g18070
Os.7985.1.S1_at--179--5531Chr03:10059562..10059586 (25 bp)
GAAAACTAGTTCTTCTGCACAAAGC
LOC_Os03g18070
Os.7985.1.S1_at--179--5651Chr03:10059530..10059554 (25 bp)
GACAGAACATTAGTCTCTAGCTTAT
LOC_Os03g18070
Os.7985.1.S1_at--914--10191Chr03:10059508..10059532 (25 bp)
TATTTTTCGATTTCTCAGGAGCCTG
LOC_Os03g18070
Os.7985.1.S1_at--446--971Chr03:10059492..10059516 (25 bp)
AGGAGCCTGGGCTTAACATCTGACC
LOC_Os03g18070
Os.7985.1.S1_at--986--1671Chr03:10059467..10059491 (25 bp)
AGCCTCCTGGGCGTTGAGCCTAGAA
LOC_Os03g18070
Os.7985.1.S1_at--221--4971Chr03:10059416..10059440 (25 bp)
GCATACATGTGTAATTCTTTCGAAT
LOC_Os03g18070
Os.7985.1.S1_at--357--5371Chr03:10059387..10059411 (25 bp)
GAAGACGGAGATCACCTCTGATGTA
LOC_Os03g18070
Os.7985.1.S1_at--52--2211Chr03:10059362..10059386 (25 bp)
ACAAACATGTGATTCTTTCGACAAG
LOC_Os03g18070
Target Sequence 
TCCACTTACTTGGTGTGCTAGCAAAGAGCTTAAACAGCGACCACTATGTTAGTGACNCCGGAGACGTAGTGTACTACCAA
ACTGACTTGAAAACTAGTTCTTCTGCACAAAGCTCGGATTGACAGAACATTAGTCTCTAGCTTATTTTTCGATTTCTCAG
GAGCCTGGGCTTAACATCTGACCAGCCTCCTGGGCGTTGAGCCTAGAATTTCAAAGCATTATCATTGTAAAGGAGCATAC
ATGTGTAATTCTTTCGAATGATTGAAGACGGAGATCACCTCTGATGTAACAAACATGTGATTCTTTCGACAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7985.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis