Browse Element(s) Details


Os.8145.2.S1_at

Description gb:AK070365.1
DB_XREF= gi:32980389
TID=Os.8145.2
CNT=16
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8145 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-127-F02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023050A10, full insert sequence.
FL= gb:AK064880.1 gb:AK099139.1 gb:AK070365.1 gb:AK060829.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1814011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g18130Os.11327.1.S1_at11/113+10098996..10103435Asparagine synthetase, putative, expressed
LOC_Os03g18140Os.8145.2.S1_at11/113+10127028..10132168expressed protein
LOC_Os03g18150OsAffx.12910.1.S1_at11/113+10142507..10144524Serine/threonine phosphatase type 2c, putative, expressed
LOC_Os03g18160Os.6159.1.S1_at11/113+10150832..10153545Mitochondrial carrier protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8145.2.S1_at--28--7831Chr03:10131670..10131694 (25 bp)
GGTCATCCGACCAGTAGAAAAAGAG
LOC_Os03g18140
Os.8145.2.S1_at--636--9771Chr03:10131700..10131724 (25 bp)
TAAGGCTAGCTTCCAAGTGTTCTGC
LOC_Os03g18140
Os.8145.2.S1_at--635--1551Chr03:10131707..10131731 (25 bp)
AGCTTCCAAGTGTTCTGCGAGACAA
LOC_Os03g18140
Os.8145.2.S1_at--1113--2471Chr03:10131746..10131770 (25 bp)
AACACCGTTGACACACCATCGATGC
LOC_Os03g18140
Os.8145.2.S1_at--591--4411Chr03:10131787..10131811 (25 bp)
GCCACCTCACTTTTTCTTACTTTGG
LOC_Os03g18140
Os.8145.2.S1_at--333--2691Chr03:10131871..10131895 (25 bp)
AAGCTGTCTTGTGCTGTGTTTAACA
LOC_Os03g18140
Os.8145.2.S1_at--170--8371Chr03:10131954..10131978 (25 bp)
GGCGGGCTGTGTTGACTATAGCTCA
LOC_Os03g18140
Os.8145.2.S1_at--992--5691Chr03:10131967..10131991 (25 bp)
GACTATAGCTCATTTCTTGTCCTGC
LOC_Os03g18140
Os.8145.2.S1_at--1123--4811Chr03:10131974..10131998 (25 bp)
GCTCATTTCTTGTCCTGCTGATAAA
LOC_Os03g18140
Os.8145.2.S1_at--614--3371Chr03:10132097..10132121 (25 bp)
CACCATTCTAGTACATTGATGCTCA
LOC_Os03g18140
Os.8145.2.S1_at--628--6891Chr03:10132128..10132152 (25 bp)
GTATAAAGGCCACGAGGTGCATCCG
LOC_Os03g18140
Target Sequence 
GGTCATCCGACCAGTAGAAAAAGAGCCAAATAAGGCTAGCTTCCAAGTGTTCTGCGAGACAAGAAAAGGAGCCAAGAACA
CCGTTGACACACCATCGATGCCCGCCGCCCGGCCGCGGCCACCTCACTTTTTCTTACTTTGGGTTACTTTTTTTTCTTCT
CTTTTTTTCACCATTTTTCTTTCTTTCTCTGGGGTTGCGTAAAGCTGTCTTGTGCTGTGTTTAACATGTGATTCTTTTGT
TAAAAAAGAAATGGAGGGTTTAGGATGGTGAAGGAGGATCTGTGGGCGGGCTGTGTTGACTATAGCTCATTTCTTGTCCT
GCTGATAAAGGATGCATGGATAGGAGAAAGCAAAAAAAGGGTGTGATGTGAGATGTAAGGGGGGAAAGAAAAAGGGAGGG
TTACATGTAAAGAATTTTTGTGTATTACACCATTCTAGTACATTGATGCTCAAGAGAGGTATAAAGGCCACGAGGTGCAT
CCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8145.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis