Browse Element(s) Details


Os.54466.1.S1_at

Description gb:AK105243.1
DB_XREF= gi:32990452
TID=Os.54466.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54466 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-113-E05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-113-E05, full insert sequence.
FL= gb:AK105243.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5850411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g58440NANA4+34548256..34549160hypothetical protein
LOC_Os04g58450OsAffx.20387.1.S1_x_at1/114+34549967..34556167retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g58460NANA4+34557648..34558010expressed protein
LOC_Os04g58470Os.8304.1.S1_at10/114+34561432..34566061expressed protein
LOC_Os04g58470OsAffx.4211.1.S1_at4/114+34561432..34566061expressed protein
LOC_Os04g58480Os.54552.1.S1_at11/114+34568301..34571150EF hand family protein, expressed
LOC_Os04g58490Os.14302.1.S1_s_at1/114+34571720..34572323hypothetical protein
LOC_Os04g58504Os.54466.1.S1_at11/114+34572782..34581660expressed protein
LOC_Os04g58504OsAffx.4211.1.S1_at11/114+34572782..34581660expressed protein
LOC_Os04g58504OsAffx.12909.1.S1_at2/114+34572782..34581660expressed protein
LOC_Os04g58520OsAffx.26656.1.S1_x_at11/114+34585218..34585811hypothetical protein
LOC_Os04g58520OsAffx.26656.1.S1_at11/114+34585218..34585811hypothetical protein
LOC_Os04g58530OsAffx.26656.1.S1_at11/114+34587860..34588719hypothetical protein
LOC_Os04g58530OsAffx.26656.1.S1_x_at11/114+34587860..34588719hypothetical protein
LOC_Os04g58540NANA4+34588896..34590045transposon protein, putative, Mariner sub-class
LOC_Os04g58550Os.14302.1.S1_s_at11/114+34591519..34594443membrane acyl-CoA binding protein, putative, expressed
LOC_Os04g58550Os.35349.1.S1_at11/114+34591519..34594443membrane acyl-CoA binding protein, putative, expressed
LOC_Os04g58560Os.49464.1.S1_at11/114+34597600..34601021Peptidase family C54 containing protein, expressed
LOC_Os04g58570Os.26458.1.A1_at11/114+34605414..34607241C2 domain protein At1g63220, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54466.1.S1_at--436--5631Chr04:34573340..34573364 (25 bp)
GACACTCACAAGTACAAGTCTGCAC
LOC_Os04g58504
Os.54466.1.S1_at--373--791Chr04:34573168..34573192 (25 bp)
ATGGGCACTTGGTTTTATAGTCGCC
LOC_Os04g58504
Os.54466.1.S1_at--347--3231Chr04:34573086..34573110 (25 bp)
CAAGATTCAGAAGAGCACCAAGGGA
LOC_Os04g58504
Os.54466.1.S1_at--776--3531Chr04:34573005..34573029 (25 bp)
CATAGACTAACTCAAGGGCCTTGAC
LOC_Os04g58504
Os.54466.1.S1_at--509--3631Chr04:34572986..34573010 (25 bp)
CTTGACTTTTCTTCTTCTTGCAAGT
LOC_Os04g58504
Os.54466.1.S1_at--41--5431Chr04:34572931..34572955 (25 bp)
GAAGCCTTGTCATTATGTTCTTTGT
LOC_Os04g58504
Os.54466.1.S1_at--1011--6711Chr04:34572915..34572939 (25 bp)
GTTCTTTGTTGCTGGCTAGTGGGTA
LOC_Os04g58504
Os.54466.1.S1_at--740--5571Chr04:34572858..34572882 (25 bp)
GAAAGTCTGGTCTATAGCGTGACTA
LOC_Os04g58504
Os.54466.1.S1_at--759--9531Chr04:34572848..34572872 (25 bp)
TCTATAGCGTGACTAGTACCCCTGG
LOC_Os04g58504
Os.54466.1.S1_at--1041--4251Chr04:34572828..34572852 (25 bp)
CCTGGCCTGATCTAACGTATGTACT
LOC_Os04g58504
Os.54466.1.S1_at--165--7011Chr04:34572808..34572832 (25 bp)
GTACTCCTACTATACTTTGCTAATA
LOC_Os04g58504
Target Sequence 
GACACTCACAAGTACAAGTCTGCACATAACAAGATATCATCTCCTCTTGTTCCTGTAGTGGTATCATGGGCACTTGGTTT
TATAGTCGCCAAGCTTTTCTTCCAAGTCGTCGAGATGTCGATCGACACCATAATCCTCTCCTTCTGTCAAGATTCAGAAG
AGCACCAAGGGAACGCGCAGTACGCTCCCCCTCTCCTAGTGGAGACACTGGATGAACAGAGTGAACTCCATAGACTAACT
CAAGGGCCTTGACTTTTCTTCTTCTTGCAAGTAGAATTAAGTCAGAATGGAGAAATTAAGTAGAAGCCTTGTCATTATGT
TCTTTGTTGCTGGCTAGTGGGTAATTTCACCATTTTGGTAGTGCACTCTGATGCTGAAAGTCTGGTCTATAGCGTGACTA
GTACCCCTGGCCTGATCTAACGTATGTACTCCTACTATACTTTGCTAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54466.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis