Browse Element(s) Details


Os.26458.1.A1_at

Description gb:AK070539.1
DB_XREF= gi:32980563
TID=Os.26458.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26458 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023060G05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023060G05, full insert sequence.
FL= gb:AK070539.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5857011/11C2 domain protein At1g63220, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g58504Os.54466.1.S1_at11/114+34572782..34581660expressed protein
LOC_Os04g58504OsAffx.4211.1.S1_at11/114+34572782..34581660expressed protein
LOC_Os04g58504OsAffx.12909.1.S1_at2/114+34572782..34581660expressed protein
LOC_Os04g58520OsAffx.26656.1.S1_x_at11/114+34585218..34585811hypothetical protein
LOC_Os04g58520OsAffx.26656.1.S1_at11/114+34585218..34585811hypothetical protein
LOC_Os04g58530OsAffx.26656.1.S1_at11/114+34587860..34588719hypothetical protein
LOC_Os04g58530OsAffx.26656.1.S1_x_at11/114+34587860..34588719hypothetical protein
LOC_Os04g58540NANA4+34588896..34590045transposon protein, putative, Mariner sub-class
LOC_Os04g58550Os.14302.1.S1_s_at11/114+34591519..34594443membrane acyl-CoA binding protein, putative, expressed
LOC_Os04g58550Os.35349.1.S1_at11/114+34591519..34594443membrane acyl-CoA binding protein, putative, expressed
LOC_Os04g58560Os.49464.1.S1_at11/114+34597600..34601021Peptidase family C54 containing protein, expressed
LOC_Os04g58570Os.26458.1.A1_at11/114+34605414..34607241C2 domain protein At1g63220, putative, expressed
LOC_Os04g58580Os.53677.1.S1_at11/114+34609185..34612135phosphomannomutase, putative, expressed
LOC_Os04g58580Os.8518.1.S1_x_at6/114+34609185..34612135phosphomannomutase, putative, expressed
LOC_Os04g58590Os.53405.1.S1_at11/114+34612987..34618277RNA recognition motif family protein, expressed
LOC_Os04g58600Os.18048.1.S1_at11/114+34620431..34624271Asparaginase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006886biological_processintracellular protein transport
GO:0005794cellular_componentGolgi apparatus
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0005543molecular_functionphospholipid binding
GO:0008060molecular_functionARF GTPase activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26458.1.A1_at--1082--8971Chr04:34606137..34606158 (22 bp)
TGAACGACATGGACCCCTACGTGAT
LOC_Os04g58570
Os.26458.1.A1_at--360--6291Chr04:34606418..34606442 (25 bp)
GATGTTCCACAGCTCAATGTCAAGA
LOC_Os04g58570
Os.26458.1.A1_at--698--9631Chr04:34606443..34606467 (25 bp)
TCATGGACAGTGATGCCTTCTCAGC
LOC_Os04g58570
Os.26458.1.A1_at--1094--8851Chr04:34606453..34606477 (25 bp)
TGATGCCTTCTCAGCTGACGATTTC
LOC_Os04g58570
Os.26458.1.A1_at--888--8931Chr04:34606468..34606491 (24 bp)
TGACGATTTCGTCGGTGAAGCAAAC
LOC_Os04g58570
Os.26458.1.A1_at--1148--5371Chr04:34606484..34606746 (25 bp)
GAAGCAAACATTCCTCTGGAGCCTG
LOC_Os04g58570
Os.26458.1.A1_at--433--4251Chr04:34606774..34606798 (25 bp)
CCGTCCACCGTGTCGTCAAGGAGGA
LOC_Os04g58570
Os.26458.1.A1_at--886--4431Chr04:34606967..34606991 (25 bp)
GCCATCATCACAACCACGAGAACGA
LOC_Os04g58570
Os.26458.1.A1_at--709--8171Chr04:34607012..34607036 (25 bp)
GGAACTGATTGCCTGCTACTAATGA
LOC_Os04g58570
Os.26458.1.A1_at--207--9071Chr04:34607074..34607098 (25 bp)
TGCTTGTCAACAATACTCCGTGCTA
LOC_Os04g58570
Os.26458.1.A1_at--305--331Chr04:34607086..34607110 (25 bp)
ATACTCCGTGCTATGATGTCCTAAG
LOC_Os04g58570
Target Sequence 
TGAACGACATGGACCCCTACGTGATCCTCACCTGCCGCACTCAGGAGCAGAAAAGCAGCGTTGCAAAAGGAGCAGGAAGC
GAGCCTGAATGGAACGAGACNTTCGTCTTCACCGTCTCCGACGATGTTCCACAGCTCAATGTCAAGATCATGGACAGTGA
TGCCTTCTCAGCTGACGATTTCGTCGGTGAAGCAAACATTCCTCTGGAGCCTGTGTTCCTGGAAGGCAGCCTTCCTCCAG
CCGTCCACCGTGTCGTCAAGGAGGAGAAGTACTGTGGAGAGATCAAGGTTGCTCTCACCTTCACTCCAGCAGCGGAAACT
CGCCATCATCACAACCACGAGAACGAGGGGGAGGGTTACAGCAGCTGGAACTGATTGCCTGCTACTAATGAGCATCAACG
AGAGGAGATCTTGTCTCAAGAATTAATGTGCTTGTCAACAATACTCCGTGCTATGATGTCCTAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26458.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis