Browse Element(s) Details


Os.49464.1.S1_at

Description gb:AK069012.1
DB_XREF= gi:32979036
TID=Os.49464.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49464 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023002M16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023002M16, full insert sequence.
FL= gb:AK069012.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5856011/11Peptidase family C54 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g58504Os.54466.1.S1_at11/114+34572782..34581660expressed protein
LOC_Os04g58504OsAffx.4211.1.S1_at11/114+34572782..34581660expressed protein
LOC_Os04g58504OsAffx.12909.1.S1_at2/114+34572782..34581660expressed protein
LOC_Os04g58520OsAffx.26656.1.S1_x_at11/114+34585218..34585811hypothetical protein
LOC_Os04g58520OsAffx.26656.1.S1_at11/114+34585218..34585811hypothetical protein
LOC_Os04g58530OsAffx.26656.1.S1_at11/114+34587860..34588719hypothetical protein
LOC_Os04g58530OsAffx.26656.1.S1_x_at11/114+34587860..34588719hypothetical protein
LOC_Os04g58540NANA4+34588896..34590045transposon protein, putative, Mariner sub-class
LOC_Os04g58550Os.14302.1.S1_s_at11/114+34591519..34594443membrane acyl-CoA binding protein, putative, expressed
LOC_Os04g58550Os.35349.1.S1_at11/114+34591519..34594443membrane acyl-CoA binding protein, putative, expressed
LOC_Os04g58560Os.49464.1.S1_at11/114+34597600..34601021Peptidase family C54 containing protein, expressed
LOC_Os04g58570Os.26458.1.A1_at11/114+34605414..34607241C2 domain protein At1g63220, putative, expressed
LOC_Os04g58580Os.53677.1.S1_at11/114+34609185..34612135phosphomannomutase, putative, expressed
LOC_Os04g58580Os.8518.1.S1_x_at6/114+34609185..34612135phosphomannomutase, putative, expressed
LOC_Os04g58590Os.53405.1.S1_at11/114+34612987..34618277RNA recognition motif family protein, expressed
LOC_Os04g58600Os.18048.1.S1_at11/114+34620431..34624271Asparaginase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006914biological_processautophagy
GO:0008233molecular_functionpeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49464.1.S1_at--523--4271Chr04:34597908..34597932 (25 bp)
CCTCGATGCCTCAGGTGAAACAGGA
LOC_Os04g58560
Os.49464.1.S1_at--358--8171Chr04:34597855..34597879 (25 bp)
GGAACAAAACTGACCTCATGAGGTA
LOC_Os04g58560
Os.49464.1.S1_at--105--5531Chr04:34597828..34597852 (25 bp)
GAAAACGTTGCGTCCAACACGTCGG
LOC_Os04g58560
Os.49464.1.S1_at--375--11Chr04:34597810..34597834 (25 bp)
ACGTCGGTCGAATGCCCTTGTTTAT
LOC_Os04g58560
Os.49464.1.S1_at--337--8951Chr04:34597768..34597792 (25 bp)
TGACTCGTTGTGTTGTCTACAGAAC
LOC_Os04g58560
Os.49464.1.S1_at--53--2471Chr04:34597746..34597770 (25 bp)
AACAAGCTGGCACTGTCTCGATACC
LOC_Os04g58560
Os.49464.1.S1_at--533--10091Chr04:34597713..34597737 (25 bp)
TTGGGTCTTGGGAGAATCAGCTTTA
LOC_Os04g58560
Os.49464.1.S1_at--1120--391Chr04:34597698..34597722 (25 bp)
ATCAGCTTTAGGTGCTACCGATGTA
LOC_Os04g58560
Os.49464.1.S1_at--1090--10851Chr04:34597645..34597669 (25 bp)
TTGGAAATCTCCTTGTATCATACAT
LOC_Os04g58560
Os.49464.1.S1_at--438--10171Chr04:34597630..34597654 (25 bp)
TATCATACATGCTCTTGTGGTTGGC
LOC_Os04g58560
Os.49464.1.S1_at--1016--4811Chr04:34597620..34597644 (25 bp)
GCTCTTGTGGTTGGCTATAACTCAA
LOC_Os04g58560
Target Sequence 
CCTCGATGCCTCAGGTGAAACAGGAGAGGAGGAATGGCAGATTCTTTAGTGAAGGAACAAAACTGACCTCATGAGGTACA
GAAAACGTTGCGTCCAACACGTCGGTCGAATGCCCTTGTTTATGTGTGGGTGAATAGAAATGACTCGTTGTGTTGTCTAC
AGAACAAGCTGGCACTGTCTCGATACCCCAGGGGGTTGGGTCTTGGGAGAATCAGCTTTAGGTGCTACCGATGTAAAAAT
GTGATCAGTTCATCGCTCATTCGTTGGAAATCTCCTTGTATCATACATGCTCTTGTGGTTGGCTATAACTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49464.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis