Browse Element(s) Details


OsAffx.4211.1.S1_at

Description tigr:9632.m05720
TID=OsAffx.4211.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5850411/11expressed protein
LOC_Os04g584704/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g58440NANA4+34548256..34549160hypothetical protein
LOC_Os04g58450OsAffx.20387.1.S1_x_at1/114+34549967..34556167retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g58460NANA4+34557648..34558010expressed protein
LOC_Os04g58470Os.8304.1.S1_at10/114+34561432..34566061expressed protein
LOC_Os04g58470OsAffx.4211.1.S1_at4/114+34561432..34566061expressed protein
LOC_Os04g58480Os.54552.1.S1_at11/114+34568301..34571150EF hand family protein, expressed
LOC_Os04g58490Os.14302.1.S1_s_at1/114+34571720..34572323hypothetical protein
LOC_Os04g58504Os.54466.1.S1_at11/114+34572782..34581660expressed protein
LOC_Os04g58504OsAffx.4211.1.S1_at11/114+34572782..34581660expressed protein
LOC_Os04g58504OsAffx.12909.1.S1_at2/114+34572782..34581660expressed protein
LOC_Os04g58520OsAffx.26656.1.S1_x_at11/114+34585218..34585811hypothetical protein
LOC_Os04g58520OsAffx.26656.1.S1_at11/114+34585218..34585811hypothetical protein
LOC_Os04g58530OsAffx.26656.1.S1_at11/114+34587860..34588719hypothetical protein
LOC_Os04g58530OsAffx.26656.1.S1_x_at11/114+34587860..34588719hypothetical protein
LOC_Os04g58540NANA4+34588896..34590045transposon protein, putative, Mariner sub-class
LOC_Os04g58550Os.14302.1.S1_s_at11/114+34591519..34594443membrane acyl-CoA binding protein, putative, expressed
LOC_Os04g58550Os.35349.1.S1_at11/114+34591519..34594443membrane acyl-CoA binding protein, putative, expressed
LOC_Os04g58560Os.49464.1.S1_at11/114+34597600..34601021Peptidase family C54 containing protein, expressed
LOC_Os04g58570Os.26458.1.A1_at11/114+34605414..34607241C2 domain protein At1g63220, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4211.1.S1_at--3--8231Chr04:34580893..34581380 (25 bp)
GGCAATCCACTCAGGATAGGTAAAG
LOC_Os04g58504
OsAffx.4211.1.S1_at--878--9451Chr04:34580883..34580906 (24 bp)
TCAGGATAGGTAAAGAAGCCCACTT
LOC_Os04g58504
OsAffx.4211.1.S1_at--392--131Chr04:34580878..34580902 (25 bp)
ATAGGTAAAGAAGCCCACTTTTGCT
LOC_Os04g58504
OsAffx.4211.1.S1_at--767--7811Chr04:34580875..34580899 (25 bp)
GGTAAAGAAGCCCACTTTTGCTTTG
LOC_Os04g58504
OsAffx.4211.1.S1_at--453--4372Chr04:34580864..34580888 (25 bp)
CCACTTTTGCTTTGCAGGGAGAAAA
LOC_Os04g58504
OsAffx.4211.1.S1_at--45--1732Chr04:34580862..34580886 (25 bp)
ACTTTTGCTTTGCAGGGAGAAAATG
LOC_Os04g58504
OsAffx.4211.1.S1_at--800--5972Chr04:34580846..34580870 (25 bp)
GAGAAAATGTGCCTTTAGTGGTTAC
LOC_Os04g58504
OsAffx.4211.1.S1_at--470--5512Chr04:34580844..34580868 (25 bp)
GAAAATGTGCCTTTAGTGGTTACTC
LOC_Os04g58504
OsAffx.4211.1.S1_at--607--2291Chr04:34580842..34580866 (25 bp)
AAATGTGCCTTTAGTGGTTACTCCT
LOC_Os04g58504
OsAffx.4211.1.S1_at--616--2971Chr04:34580841..34580865 (25 bp)
AATGTGCCTTTAGTGGTTACTCCTA
LOC_Os04g58504
OsAffx.4211.1.S1_at--975--751Chr04:34580840..34580864 (25 bp)
ATGTGCCTTTAGTGGTTACTCCTAT
LOC_Os04g58504
Target Sequence 
GGCAATCCACTCAGGATAGGTAAAGAAGCCCACTTTTGCTTTGCAGGGAGAAAATGTGCCTTTAGTGGTTACTCCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4211.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis