Browse Element(s) Details


Os.18048.1.S1_at

Description gb:AK121739.1
DB_XREF= gi:37991362
TID=Os.18048.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18048 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013001C03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033085H01, full insert sequence.
FL= gb:AK064978.1 gb:AK121739.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5860011/11Asparaginase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g58560Os.49464.1.S1_at11/114+34597600..34601021Peptidase family C54 containing protein, expressed
LOC_Os04g58570Os.26458.1.A1_at11/114+34605414..34607241C2 domain protein At1g63220, putative, expressed
LOC_Os04g58580Os.53677.1.S1_at11/114+34609185..34612135phosphomannomutase, putative, expressed
LOC_Os04g58580Os.8518.1.S1_x_at6/114+34609185..34612135phosphomannomutase, putative, expressed
LOC_Os04g58590Os.53405.1.S1_at11/114+34612987..34618277RNA recognition motif family protein, expressed
LOC_Os04g58600Os.18048.1.S1_at11/114+34620431..34624271Asparaginase family protein, expressed
LOC_Os04g58610Os.51336.1.S1_at11/114+34633903..34635823retrotransposon protein, putative, unclassified, expressed
LOC_Os04g58620Os.5720.1.S1_s_at11/114+34641351..34650524K+ efflux antiporter, putative, expressed
LOC_Os04g58620Os.5720.1.S2_at11/114+34641351..34650524K+ efflux antiporter, putative, expressed
LOC_Os04g58620Os.51073.1.S1_at11/114+34641351..34650524K+ efflux antiporter, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006516biological_processglycoprotein catabolism
GO:0004067molecular_functionasparaginase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18048.1.S1_at--958--4511Chr04:34623161..34623185 (25 bp)
GCCCTTTGGCACACCGTTTATAGTT
LOC_Os04g58600
Os.18048.1.S1_at--950--6611Chr04:34623190..34623214 (25 bp)
GTTGTGCAACTGGAGCCGGTGAACA
LOC_Os04g58600
Os.18048.1.S1_at--425--10711Chr04:34623229..34623253 (25 bp)
TTGCTGCACGTGAATGTTGTATCTC
LOC_Os04g58600
Os.18048.1.S1_at--444--9591Chr04:34623606..34623625 (20 bp)
TCATTGATACAATCTGGCCCTGCTT
LOC_Os04g58600
Os.18048.1.S1_at--611--4191Chr04:34623618..34623642 (25 bp)
CCCTGCTTCTGCTTGTACCAAAGTT
LOC_Os04g58600
Os.18048.1.S1_at--23--3611Chr04:34623816..34623840 (25 bp)
CATTGGGAGCCGCTGAACTTGTTGC
LOC_Os04g58600
Os.18048.1.S1_at--951--2351Chr04:34624047..34624071 (25 bp)
AAACCATTTTGCTACTCGTGTCAAC
LOC_Os04g58600
Os.18048.1.S1_at--248--4751Chr04:34624099..34624123 (25 bp)
GCTGTTGTTTTAATGGCGTGTGCCA
LOC_Os04g58600
Os.18048.1.S1_at--1157--4391Chr04:34624120..34624144 (25 bp)
GCCACTGCAGTACCTCTTGTGAAAA
LOC_Os04g58600
Os.18048.1.S1_at--586--4991Chr04:34624160..34624184 (25 bp)
GCATGTAGTCTGGTCTTGTACCGAA
LOC_Os04g58600
Os.18048.1.S1_at--643--8431Chr04:34624196..34624220 (25 bp)
TGGCCTAACCCAAAATTTCTGTCGT
LOC_Os04g58600
Target Sequence 
GCCCTTTGGCACACCGTTTATAGTTGGGTGTTGTGCAACTGGAGCCGGTGAACACTTGATTAGAGGATTTGCTGCACGTG
AATGTTGTATCTCATCATCATTGATACAATCTGGCCCTGCTTCTGCTTGTACCAAAGTTNTGCGCCAAGCGGTTCAAAGC
AGCAGCGAGATGTCTCNTGATACAGGCGCTGGGTTGTTGCTAATTCAGGCTGATGTTCTAAAGAGAGGGGAGGTATNTGC
ATTGGGAGCCGCTGAACTTGTTGCNGCCTATTCCTCCCCTTCATTTGGTGTTGGTTATCTCGGAAGCAATATGAACAGTC
CTAAGGTTGCAATGCTTAGATCTTCAAAAGCTGCACCCAATACGATAAACCATTTTGCTACTCGTGTCAACTTTGACGCA
CAATCTGACCAATGATGTGCTGTTGTTTTAATGGCGTGTGCCACTGCAGTACCTCTTGTGAAAAGAGCATGNTGGTGGTG
CATGTAGTCTGGTCTTGTACCGAAGANATTGTTTTTGGCCTAACCCAAAATTTCTGTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18048.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis