Browse Element(s) Details


Os.5720.1.S2_at

Description gb:AK121846.1
DB_XREF= gi:37991469
TID=Os.5720.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.5720 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033120G14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033101J11, full insert sequence.
FL= gb:AK068406.1 gb:AK121846.1 gb:AK103142.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5862011/11K+ efflux antiporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g58590Os.53405.1.S1_at11/114+34612987..34618277RNA recognition motif family protein, expressed
LOC_Os04g58600Os.18048.1.S1_at11/114+34620431..34624271Asparaginase family protein, expressed
LOC_Os04g58610Os.51336.1.S1_at11/114+34633903..34635823retrotransposon protein, putative, unclassified, expressed
LOC_Os04g58620Os.5720.1.S1_s_at11/114+34641351..34650524K+ efflux antiporter, putative, expressed
LOC_Os04g58620Os.5720.1.S2_at11/114+34641351..34650524K+ efflux antiporter, putative, expressed
LOC_Os04g58620Os.51073.1.S1_at11/114+34641351..34650524K+ efflux antiporter, putative, expressed
LOC_Os04g58630Os.27360.1.A1_at10/114+34650932..34658107DNA mismatch repair protein MSH3, putative, expressed
LOC_Os04g58630OsAffx.9818.1.S1_x_at1/114+34650932..34658107DNA mismatch repair protein MSH3, putative, expressed
LOC_Os04g58640Os.12933.1.S1_at11/114+34658756..34662553nudix type motif 21, putative, expressed
LOC_Os04g58650NANA4+34665348..34666184retrotransposon protein, putative, unclassified
LOC_Os04g58660NANA4+34666530..34668162retrotransposon protein, putative, unclassified
LOC_Os04g58669NANA4+34671809..34672070NA
LOC_Os04g58680NANA4+34672753..34673130Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os04g58690Os.54739.1.S1_at11/114+34673898..34679728Adenosine-deaminase domain containing protein, expressed
LOC_Os04g58690Os.53243.1.S1_x_at11/114+34673898..34679728Adenosine-deaminase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006813biological_processpotassium ion transport
GO:0009941cellular_componentchloroplast envelope
GO:0015079molecular_functionpotassium ion transporter activity
GO:0015386molecular_functionpotassium:hydrogen antiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5720.1.S2_at--827--10751Chr04:34641798..34641822 (25 bp)
TTGAGCTGATGCGTTAGTCACCTCC
LOC_Os04g58620
Os.5720.1.S2_at--918--9671Chr04:34641781..34641805 (25 bp)
TCACCTCCCTTAGACTGTACAGTAG
LOC_Os04g58620
Os.5720.1.S2_at--858--6511Chr04:34641634..34641658 (25 bp)
GATATTACTTATCTTCTACCATCAG
LOC_Os04g58620
Os.5720.1.S2_at--992--3431Chr04:34641612..34641636 (25 bp)
CAGTTCATTTATTTGTAGCCCTTTT
LOC_Os04g58620
Os.5720.1.S2_at--227--9971Chr04:34641597..34641621 (25 bp)
TAGCCCTTTTACTCCGTTAGCAAGT
LOC_Os04g58620
Os.5720.1.S2_at--888--8531Chr04:34641562..34641586 (25 bp)
TGGAGAACTAGGACGATGCTTGCAC
LOC_Os04g58620
Os.5720.1.S2_at--64--6331Chr04:34641548..34641572 (25 bp)
GATGCTTGCACCTTACATGGAGAAC
LOC_Os04g58620
Os.5720.1.S2_at--983--8891Chr04:34641521..34641545 (25 bp)
TGAGAATTTCACAAGTGGCCTCCAA
LOC_Os04g58620
Os.5720.1.S2_at--560--2871Chr04:34641509..34641533 (25 bp)
AAGTGGCCTCCAAATGGCGCATGAT
LOC_Os04g58620
Os.5720.1.S2_at--517--2851Chr04:34641480..34641504 (25 bp)
AAGTCGTAGTCGTCTCTTATGAGGA
LOC_Os04g58620
Os.5720.1.S2_at--88--6551Chr04:34641414..34641438 (25 bp)
GATTTTGTTAGTACTCAGAGCTGAT
LOC_Os04g58620
Target Sequence 
TTGAGCTGATGCGTTAGTCACCTCCCTTAGACTGTACAGTAGATAATCTGTCATCAAAGATAATTTGCGTATAGAAAAGT
AGTAGCAAAATAATTCACGCAATNACGATTCCCATTNTTTGAAAACTTAGCATTACCCCTTTTTTTAATGTATGGTAGGA
CATAGGATATTACTTATCTTCTACCATCAGTTCATTTATTTGTAGCCCTTTTACTCCGTTAGCAAGTAATTTCTTGATGG
AGAACTAGGACGATGCTTGCACCTTACATGGAGAACACTGAGAATTTCACAAGTGGCCTCCAAATGGCGCATGATGGATA
AGTCGTAGTCGTCTCTTATGAGGAATCCATACAACCAAGATTTTGGGTTCAGAACTAAATATTATGATTTTGTTAGTACT
CAGAGCTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5720.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis