Browse Element(s) Details


Os.27360.1.A1_at

Description gb:AK065300.1
DB_XREF= gi:32975318
TID=Os.27360.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27360 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013002N18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002N18, full insert sequence.
FL= gb:AK065300.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5863010/11DNA mismatch repair protein MSH3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g58610Os.51336.1.S1_at11/114+34633903..34635823retrotransposon protein, putative, unclassified, expressed
LOC_Os04g58620Os.5720.1.S1_s_at11/114+34641351..34650524K+ efflux antiporter, putative, expressed
LOC_Os04g58620Os.5720.1.S2_at11/114+34641351..34650524K+ efflux antiporter, putative, expressed
LOC_Os04g58620Os.51073.1.S1_at11/114+34641351..34650524K+ efflux antiporter, putative, expressed
LOC_Os04g58630Os.27360.1.A1_at10/114+34650932..34658107DNA mismatch repair protein MSH3, putative, expressed
LOC_Os04g58630OsAffx.9818.1.S1_x_at1/114+34650932..34658107DNA mismatch repair protein MSH3, putative, expressed
LOC_Os04g58640Os.12933.1.S1_at11/114+34658756..34662553nudix type motif 21, putative, expressed
LOC_Os04g58650NANA4+34665348..34666184retrotransposon protein, putative, unclassified
LOC_Os04g58660NANA4+34666530..34668162retrotransposon protein, putative, unclassified
LOC_Os04g58669NANA4+34671809..34672070NA
LOC_Os04g58680NANA4+34672753..34673130Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os04g58690Os.54739.1.S1_at11/114+34673898..34679728Adenosine-deaminase domain containing protein, expressed
LOC_Os04g58690Os.53243.1.S1_x_at11/114+34673898..34679728Adenosine-deaminase domain containing protein, expressed
LOC_Os04g58700Os.10107.1.S1_at11/114+34682562..34688298leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os04g58700Os.10107.2.S1_x_at10/114+34682562..34688298leucine-rich repeat transmembrane protein kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006298biological_processmismatch repair
GO:0003684molecular_functiondamaged DNA binding
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27360.1.A1_at--330--311Chr04:34651414..34651438 (25 bp)
ATACTTCACCACTGGTTTCCTTTTG
LOC_Os04g58630
Os.27360.1.A1_at--51--10391Chr04:34651298..34651410 (25 bp)
TTTTGAAGGGATCAGGTGGCATCTT
LOC_Os04g58630
Os.27360.1.A1_at--471--7731Chr04:34651284..34651308 (25 bp)
GGTGGCATCTTCTGATAATCTACTA
LOC_Os04g58630
Os.27360.1.A1_at--374--5331Chr04:34651128..34651152 (25 bp)
GAAGTTAAAGCCAACTCTATGGAAG
LOC_Os04g58630
Os.27360.1.A1_at--566--9471Chr04:34651083..34651107 (25 bp)
TCTGTAGTTACAGCATCAGTTGATG
LOC_Os04g58630
Os.27360.1.A1_at--701--6631Chr04:34651065..34651089 (25 bp)
GTTGATGTATCCAGACTTGTCCAAA
LOC_Os04g58630
Os.27360.1.A1_at--379--2631Chr04:34651042..34651066 (25 bp)
AACCATATTAAAGCTTTGCCTCCAT
LOC_Os04g58630
Os.27360.1.A1_at--279--4891Chr04:34651030..34651054 (25 bp)
GCTTTGCCTCCATTTTGAAGTGTAG
LOC_Os04g58630
Os.27360.1.A1_at--124--3771Chr04:34650986..34651010 (25 bp)
CTCTTATATCCTATTCCTCAGTGAA
LOC_Os04g58630
Os.27360.1.A1_at--779--3751Chr04:34650973..34650994 (22 bp)
CTCAGTGAAATATCCCTGTGTTGGA
LOC_Os04g58630
Os.27360.1.A1_at--890--4191NONE
CCCTGTGTTGGAATTTGTGTCTATT
NONE
Target Sequence 
ATACTTCACCACTGGTTTCCTTTTGTTTTTTTGAAGGGATCAGGTGGCATCTTCTGATAATCTACTAAAAATTTATCGAA
GATGATTTTGGGACTAATGTTATTTATCGAAGACGATTTTGGGANTAATGTTAGCCATTGTGCTAATGGCAGCAGTGTAG
ACTGTAAAATATAGTGGATCTGGAAGGTGGAGGNCCTTGAAGTTAAAGCCAACTCTATGGAAGAGCAAGTAACTTATTGT
AAATCTGTAGTTACAGCATCAGTTGATGTATCCAGACTTGTCCAAACCATATTAAAGCTTTGCCTCCATTTTGAAGTGTA
GATGCAGAAATGAGATGNANCTCTTATATCCTATTCCTCAGTGAAATATCCCTGTGTTGGAATTTGTGTCTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27360.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis