Browse Element(s) Details


Os.10107.1.S1_at

Description gb:AK065557.1
DB_XREF= gi:32975575
TID=Os.10107.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10107 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013030D07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013030D07, full insert sequence.
FL= gb:AK065557.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5870011/11leucine-rich repeat transmembrane protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g58630Os.27360.1.A1_at10/114+34650932..34658107DNA mismatch repair protein MSH3, putative, expressed
LOC_Os04g58630OsAffx.9818.1.S1_x_at1/114+34650932..34658107DNA mismatch repair protein MSH3, putative, expressed
LOC_Os04g58640Os.12933.1.S1_at11/114+34658756..34662553nudix type motif 21, putative, expressed
LOC_Os04g58650NANA4+34665348..34666184retrotransposon protein, putative, unclassified
LOC_Os04g58660NANA4+34666530..34668162retrotransposon protein, putative, unclassified
LOC_Os04g58669NANA4+34671809..34672070NA
LOC_Os04g58680NANA4+34672753..34673130Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os04g58690Os.54739.1.S1_at11/114+34673898..34679728Adenosine-deaminase domain containing protein, expressed
LOC_Os04g58690Os.53243.1.S1_x_at11/114+34673898..34679728Adenosine-deaminase domain containing protein, expressed
LOC_Os04g58700Os.10107.1.S1_at11/114+34682562..34688298leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os04g58700Os.10107.2.S1_x_at10/114+34682562..34688298leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os04g58710Os.22374.1.S2_a_at11/114+34689376..34691411AMP-binding enzyme family protein, expressed
LOC_Os04g58720Os.9734.1.S1_at11/114+34696725..34700925Phosphoribosylanthranilate transferase, putative, expressed
LOC_Os04g58730Os.7934.1.S1_at11/114+34703127..34707435AT hook motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10107.1.S1_at--352--71Chr04:34688105..34688129 (25 bp)
ATTGCACAGCAGGTGTTTCTTCAAT
LOC_Os04g58700
Os.10107.1.S1_at--485--1531Chr04:34688112..34688136 (25 bp)
AGCAGGTGTTTCTTCAATGCCTCAC
LOC_Os04g58700
Os.10107.1.S1_at--1115--10311Chr04:34688120..34688144 (25 bp)
TTTCTTCAATGCCTCACCGGTCTAA
LOC_Os04g58700
Os.10107.1.S1_at--191--3031Chr04:34688127..34688151 (25 bp)
AATGCCTCACCGGTCTAACGAAATT
LOC_Os04g58700
Os.10107.1.S1_at--160--9671Chr04:34688133..34688157 (25 bp)
TCACCGGTCTAACGAAATTCCTTTG
LOC_Os04g58700
Os.10107.1.S1_at--342--2471Chr04:34688143..34688167 (25 bp)
AACGAAATTCCTTTGTTCGCCTCTG
LOC_Os04g58700
Os.10107.1.S1_at--100--2251Chr04:34688147..34688171 (25 bp)
AAATTCCTTTGTTCGCCTCTGCTGG
LOC_Os04g58700
Os.10107.1.S1_at--414--4171Chr04:34688160..34688184 (25 bp)
CGCCTCTGCTGGCATACATGTGTAA
LOC_Os04g58700
Os.10107.1.S1_at--197--2111Chr04:34688175..34688199 (25 bp)
ACATGTGTAAGTTTGTGGTGCAACC
LOC_Os04g58700
Os.10107.1.S1_at--577--10831Chr04:34688187..34688211 (25 bp)
TTGTGGTGCAACCTATTAGGATGAA
LOC_Os04g58700
Os.10107.1.S1_at--948--10411Chr04:34688202..34688226 (25 bp)
TTAGGATGAAAACCGGCATGGAAAT
LOC_Os04g58700
Target Sequence 
ATTGCACAGCAGGTGTTTCTTCAATGCCTCACCGGTCTAACGAAATTCCTTTGTTCGCCTCTGCTGGCATACATGTGTAA
GTTTGTGGTGCAACCTATTAGGATGAAAACCGGCATGGAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10107.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis