Browse Element(s) Details


Os.9734.1.S1_at

Description gb:AK073897.1
DB_XREF= gi:32983920
TID=Os.9734.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.9734 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033113J04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033075A06, full insert sequence.
FL= gb:AK102910.1 gb:AK073897.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5872011/11Phosphoribosylanthranilate transferase, putative, expressed
LOC_Os07g182301/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g58669NANA4+34671809..34672070NA
LOC_Os04g58680NANA4+34672753..34673130Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os04g58690Os.54739.1.S1_at11/114+34673898..34679728Adenosine-deaminase domain containing protein, expressed
LOC_Os04g58690Os.53243.1.S1_x_at11/114+34673898..34679728Adenosine-deaminase domain containing protein, expressed
LOC_Os04g58700Os.10107.1.S1_at11/114+34682562..34688298leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os04g58700Os.10107.2.S1_x_at10/114+34682562..34688298leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os04g58710Os.22374.1.S2_a_at11/114+34689376..34691411AMP-binding enzyme family protein, expressed
LOC_Os04g58720Os.9734.1.S1_at11/114+34696725..34700925Phosphoribosylanthranilate transferase, putative, expressed
LOC_Os04g58730Os.7934.1.S1_at11/114+34703127..34707435AT hook motif family protein, expressed
LOC_Os04g58740OsAffx.14473.1.S1_at11/114+34720167..34720562hypothetical protein
LOC_Os04g58750Os.9165.1.S1_at11/114+34723921..34730647Protein kinase APK1B, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0005829cellular_componentcytosol
GO:0004791molecular_functionthioredoxin-disulfide reductase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9734.1.S1_at--826--5091Chr04:34700462..34700486 (25 bp)
GCACTGCTTAGCTGGAGGGATCCTC
LOC_Os04g58720
Os.9734.1.S1_at--610--7552Chr04:34700487..34700511 (25 bp)
GGGCCACAGCAATATTTGTCCTCTT
LOC_Os04g58720
Os.9734.1.S1_at--1036--271Chr04:34700528..34700552 (25 bp)
ATAGTCCTGTATGTTACACCACTCC
LOC_Os04g58720
Os.9734.1.S1_at--1033--5051Chr04:34700561..34700585 (25 bp)
GCAGCATTGGCAGGGTTCTATGTCA
LOC_Os04g58720
Os.9734.1.S1_at--387--3511Chr04:34700584..34700608 (25 bp)
CATGAGGCACCCGAGGTTCAGATAT
LOC_Os04g58720
Os.9734.1.S1_at--437--10191Chr04:34700606..34700630 (25 bp)
TATAGGTTGCCTTCAACGCCAGTGA
LOC_Os04g58720
Os.9734.1.S1_at--1151--5211Chr04:34700629..34700653 (25 bp)
GAATTTCTTCAGACGACTGCCAGCA
LOC_Os04g58720
Os.9734.1.S1_at--330--9831Chr04:34700672..34700696 (25 bp)
TAAAATAGCTGCCATCTGGTGGCCT
LOC_Os04g58720
Os.9734.1.S1_at--1161--6991Chr04:34700721..34700745 (25 bp)
GTACTCCATGCCGATTACTGTAGTC
LOC_Os04g58720
Os.9734.1.S1_at--234--10071Chr04:34700741..34700765 (25 bp)
TAGTCTGGCTTCGTTTTGTTGTTAT
LOC_Os04g58720
Os.9734.1.S1_at--950--4471Chr04:34700794..34700818 (25 bp)
GCCTGTATATCGTATTAGCTTCTGA
LOC_Os04g58720
Target Sequence 
GCACTGCTTAGCTGGAGGGATCCTCGGGCCACAGCAATATTTGTCCTCTTNTGTCTCATAGCAGCAATAGTCCTGTATGT
TACACCACTCCAAGTTCTTGCAGCATTGGCAGGGTTCTATGTCATGAGGCACCCGAGGTTCAGATATAGGTTGCCTTCAA
CGCCAGTGAATTTCTTCAGACGACTGCCAGCAAGGACCGACAGCATGCTATAAAATAGCTGCCATCTGGTGGCCTTATCA
TTGTGATAAATTGGATGGAGTACTCCATGCCGATTACTGTAGTCTGGCTTCGTTTTGTTGTTATTGTAACTGTGTGTTCT
TAGTACTTGAGAGCCTGTATATCGTATTAGCTTCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9734.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis