Browse Element(s) Details


OsAffx.14473.1.S1_at

Description tigr:9632.m05741
TID=OsAffx.14473.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5874011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g58720Os.9734.1.S1_at11/114+34696725..34700925Phosphoribosylanthranilate transferase, putative, expressed
LOC_Os04g58730Os.7934.1.S1_at11/114+34703127..34707435AT hook motif family protein, expressed
LOC_Os04g58740OsAffx.14473.1.S1_at11/114+34720167..34720562hypothetical protein
LOC_Os04g58750Os.9165.1.S1_at11/114+34723921..34730647Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os04g58760OsAffx.26659.1.S1_at10/114+34731540..34732359plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os04g58760OsAffx.26659.1.S1_x_at10/114+34731540..34732359plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os04g58770OsAffx.4212.1.A1_at10/114+34737378..34739004hypothetical protein
LOC_Os04g58770OsAffx.8714.1.S1_at1/114+34737378..34739004hypothetical protein
LOC_Os04g58780Os.20911.1.S1_at11/114+34739546..34751031pentatricopeptide, putative, expressed
LOC_Os04g58780Os.22699.1.S1_at3/114+34739546..34751031pentatricopeptide, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14473.1.S1_at--1116--8751Chr04:34720197..34720221 (25 bp)
TGTAGTTCACCGCAGCAACGGGCAG
LOC_Os04g58740
OsAffx.14473.1.S1_at--884--10731Chr04:34720228..34720252 (25 bp)
TTGACAGGGTGCATAGTGCAACCGG
LOC_Os04g58740
OsAffx.14473.1.S1_at--707--10011Chr04:34720241..34720265 (25 bp)
TAGTGCAACCGGAGACAGGGTAACT
LOC_Os04g58740
OsAffx.14473.1.S1_at--181--7051Chr04:34720260..34720284 (25 bp)
GTAACTGAGCGGCATCACTGCAGGC
LOC_Os04g58740
OsAffx.14473.1.S1_at--468--2671Chr04:34720319..34720343 (25 bp)
AAGCGTGCCACGACAAGCAACATCA
LOC_Os04g58740
OsAffx.14473.1.S1_at--321--5152Chr04:34720335..34720359 (25 bp)
GCAACATCACGGAGACATCAGACAT
LOC_Os04g58740
OsAffx.14473.1.S1_at--636--391Chr04:34720351..34720375 (25 bp)
ATCAGACATCCCATGGCGCGGTGGC
LOC_Os04g58740
OsAffx.14473.1.S1_at--664--7851Chr04:34720377..34720401 (25 bp)
GGTAGAGGCCTGAGACGCAACAGAA
LOC_Os04g58740
OsAffx.14473.1.S1_at--224--2471Chr04:34720401..34720425 (25 bp)
AACACAAGCATGTTTGCCCCGCCAG
LOC_Os04g58740
OsAffx.14473.1.S1_at--291--1331Chr04:34720468..34720492 (25 bp)
AGAGGAAGAGCAACGCCGCGGATTC
LOC_Os04g58740
OsAffx.14473.1.S1_at--340--7931Chr04:34720487..34720511 (25 bp)
GGATTCGCACTTCCGCAGAGCGCGA
LOC_Os04g58740
Target Sequence 
TGTAGTTCACCGCAGCAACGGGCAGGCAGGGTTGACAGGGTGCATAGTGCAACCGGAGACAGGGTAACTGAGCGGCATCA
CTGCAGGCCGGCATTCCGTCGAACACTTGGCGCGCACGCGCCAAGCGTGCCACGACAAGCAACATCACGGAGACATCAGA
CATCCCATGGCGCGGTGGCCGGTAGAGGCCTGAGACGCAACAGAAACACAAGCATGTTTGCCCCGCCAGCTCACGGCGAA
ATCCGCGGCGCCCACGCAGCATCGAAGAGGAAGAGGAAGAGCAACGCCGCGGATTCGCACTTCCGCAGAGCGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14473.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis