Browse Element(s) Details


OsAffx.8714.1.S1_at

Description gb:XM_354185.1
DB_XREF= gi:35189803
TID=OsAffx.8714.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g587701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g58740OsAffx.14473.1.S1_at11/114+34720167..34720562hypothetical protein
LOC_Os04g58750Os.9165.1.S1_at11/114+34723921..34730647Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os04g58760OsAffx.26659.1.S1_at10/114+34731540..34732359plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os04g58760OsAffx.26659.1.S1_x_at10/114+34731540..34732359plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os04g58770OsAffx.4212.1.A1_at10/114+34737378..34739004hypothetical protein
LOC_Os04g58770OsAffx.8714.1.S1_at1/114+34737378..34739004hypothetical protein
LOC_Os04g58780Os.20911.1.S1_at11/114+34739546..34751031pentatricopeptide, putative, expressed
LOC_Os04g58780Os.22699.1.S1_at3/114+34739546..34751031pentatricopeptide, putative, expressed
LOC_Os04g58790Os.14127.1.S1_at1/114+34752981..34753226hypothetical protein
LOC_Os04g58800Os.35576.1.S1_at11/114+34756595..34758671Ubiquitin-conjugating enzyme spm2, putative, expressed
LOC_Os04g58810Os.140.3.S1_x_at11/114+34761534..34762752CAF1 family ribonuclease containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8714.1.S1_at--876--532Chr07:7400933..7400957 (25 bp)
ATCCGAGTTTCTATCCGTATTCGGC
NONE
OsAffx.8714.1.S1_at--763--6072Chr07:7400937..7400961 (25 bp)
GAGTTTCTATCCGTATTCGGCACTA
NONE
OsAffx.8714.1.S1_at--315--6875Chr08:2095975..2096061 (25 bp)
GTATTCGGCACTATCCGTGTCCGAC
NONE
OsAffx.8714.1.S1_at--219--8712Chr07:7400966..7400990 (25 bp)
TGTCCGACCCGATTCCAATTATAAA
NONE
OsAffx.8714.1.S1_at--1016--5812Chr07:7400971..7400995 (25 bp)
GACCCGATTCCAATTATAAAATATG
NONE
OsAffx.8714.1.S1_at--268--7611Chr07:7401007..7401031 (25 bp)
GGGAAGGGTGACATTCGATCGAACC
NONE
OsAffx.8714.1.S1_at--610--7651Chr07:7401012..7401036 (25 bp)
GGGTGACATTCGATCGAACCCGACC
NONE
OsAffx.8714.1.S1_at--88--5692Chr07:7401016..7401040 (25 bp)
GACATTCGATCGAACCCGACCCGTT
NONE
OsAffx.8714.1.S1_at--898--10372Chr07:7401039..7401143 (25 bp)
TTTTCACCCCTATATATGTGGGAGA
NONE
OsAffx.8714.1.S1_at--358--232Chr07:7400793..7401154 (25 bp)
ATATATGTGGGAGACGATCGTACGA
NONE
OsAffx.8714.1.S1_at--779--8031NONE
GGAGACGATCGTACGACGACTTCGA
NONE
Target Sequence 
ATCCGAGTTTCTATCCGTATTCGGCACTATCCGTGTCCGACCCGATTCCAATTATAAAATATGGGTTAGGATGTGGGAAG
GGTGACATTCGATCGAACCCGACCCGTTTTCACCCCTATATATGTGGGAGACGATCGTACGACGACTTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8714.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis