Browse Element(s) Details


Os.35576.1.S1_at

Description gb:AK066799.1
DB_XREF= gi:32976817
TID=Os.35576.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35576 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013077E20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013077E20, full insert sequence.
FL= gb:AK066799.1 gb:AK058755.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5880011/11Ubiquitin-conjugating enzyme spm2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g58760OsAffx.26659.1.S1_at10/114+34731540..34732359plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os04g58760OsAffx.26659.1.S1_x_at10/114+34731540..34732359plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os04g58770OsAffx.4212.1.A1_at10/114+34737378..34739004hypothetical protein
LOC_Os04g58770OsAffx.8714.1.S1_at1/114+34737378..34739004hypothetical protein
LOC_Os04g58780Os.20911.1.S1_at11/114+34739546..34751031pentatricopeptide, putative, expressed
LOC_Os04g58780Os.22699.1.S1_at3/114+34739546..34751031pentatricopeptide, putative, expressed
LOC_Os04g58790Os.14127.1.S1_at1/114+34752981..34753226hypothetical protein
LOC_Os04g58800Os.35576.1.S1_at11/114+34756595..34758671Ubiquitin-conjugating enzyme spm2, putative, expressed
LOC_Os04g58810Os.140.3.S1_x_at11/114+34761534..34762752CAF1 family ribonuclease containing protein, expressed
LOC_Os04g58820Os.7191.1.A1_at11/114+34769918..34770911uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os04g58830Os.10979.1.S1_at11/114+34773043..34775731Ribosome biogenesis regulatory protein containing protein, expressed
LOC_Os04g58840Os.51017.1.S1_at8/114+34778015..34780007Eukaryotic aspartyl protease family protein, expressed
LOC_Os04g58850Os.7901.1.S1_at11/114+34781950..34783076Harpin-induced protein 1 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004840molecular_functionubiquitin conjugating enzyme activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35576.1.S1_at--954--5951Chr04:34758268..34758292 (25 bp)
GAGAATATCCTGACGCAGCTGAAGA
LOC_Os04g58800
Os.35576.1.S1_at--1086--8571Chr04:34758323..34758347 (25 bp)
TGGTTCAGCCTCCAGAAGGGACCTT
LOC_Os04g58800
Os.35576.1.S1_at--387--9531Chr04:34758350..34758374 (25 bp)
TCTAGTCATACCGTGAGATGTTCGA
LOC_Os04g58800
Os.35576.1.S1_at--657--731Chr04:34758367..34758391 (25 bp)
ATGTTCGAGGGCATGTTCCTGTTGC
LOC_Os04g58800
Os.35576.1.S1_at--252--7931Chr04:34758418..34758442 (25 bp)
GGATTGGATTGCTATCTCTGTCCAT
LOC_Os04g58800
Os.35576.1.S1_at--1153--4191Chr04:34758472..34758496 (25 bp)
CCCCAAATCTGTCACCTGAAAGGTA
LOC_Os04g58800
Os.35576.1.S1_at--513--6591Chr04:34758528..34758552 (25 bp)
GTTGGTAATTACTGAATCGCCTTGC
LOC_Os04g58800
Os.35576.1.S1_at--752--5251Chr04:34758541..34758565 (25 bp)
GAATCGCCTTGCTAATGCCTAATGG
LOC_Os04g58800
Os.35576.1.S1_at--469--9171Chr04:34758567..34758591 (25 bp)
TGCCCTGCTTGCTATCATATGCATG
LOC_Os04g58800
Os.35576.1.S1_at--1059--2091Chr04:34758604..34758628 (25 bp)
ACAGGTTTGGCTTGGTTTGAACGCT
LOC_Os04g58800
Os.35576.1.S1_at--376--351Chr04:34758641..34758665 (25 bp)
ATAACACGAGACCTCCTGTATCTGG
LOC_Os04g58800
Target Sequence 
GAGAATATCCTGACGCAGCTGAAGAAGGAGATGGCCGCGCCGCACAGCCGCAAGNTGGTTCAGCCTCCAGAAGGGACCTT
NTTCTAGTCATACCGTGAGATGTTCGAGGGCATGTTCCTGTTGCTGCTGCTGCTGCTATATACTCATATAGGATTGGATT
GCTATCTCTGTCCATGGCACGCACCGTTNGTAACTATCACCTGCCCCCAAATCTGTCACCTGAAAGGTAGTAGTACTAGA
TGTGTATGTAGTGCAGTGTTGTTGGTAATTACTGAATCGCCTTGCTAATGCCTAATGGCTGCCCTGCTTGCTATCATATG
CATGCCAATGTGAAGGACAGGTTTGGCTTGGTTTGAACGCTGAGAGNAGNNTGNAATAACACGAGACCTCCTGTATCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35576.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis