Browse Element(s) Details


Os.7901.1.S1_at

Description gb:AF039532.1
DB_XREF= gi:2801537
GEN=Hin1
TID=Os.7901.1
CNT=32
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7901 (NCBI UniGene Cluster)
DEF=Oryza sativa harpin induced gene 1 homolog (Hin1) mRNA, complete cds.
PROD=harpin induced gene 1 homolog
FL= gb:AF039532.1 gb:AK104363.1 gb:AK070446.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5885011/11Harpin-induced protein 1 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g58800Os.35576.1.S1_at11/114+34756595..34758671Ubiquitin-conjugating enzyme spm2, putative, expressed
LOC_Os04g58810Os.140.3.S1_x_at11/114+34761534..34762752CAF1 family ribonuclease containing protein, expressed
LOC_Os04g58820Os.7191.1.A1_at11/114+34769918..34770911uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os04g58830Os.10979.1.S1_at11/114+34773043..34775731Ribosome biogenesis regulatory protein containing protein, expressed
LOC_Os04g58840Os.51017.1.S1_at8/114+34778015..34780007Eukaryotic aspartyl protease family protein, expressed
LOC_Os04g58850Os.7901.1.S1_at11/114+34781950..34783076Harpin-induced protein 1 containing protein, expressed
LOC_Os04g58860Os.17892.1.S1_at9/114+34791894..34793355Harpin-induced protein 1 containing protein, expressed
LOC_Os04g58870Os.18157.1.S1_at11/114+34797521..34801722Exo70 exocyst complex subunit family protein, expressed
LOC_Os04g58880Os.6072.1.S1_at11/114+34802943..34809060exocyst subunit EXO70 family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009618biological_processresponse to pathogenic bacteria
GO:0042828biological_processresponse to pathogen
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7901.1.S1_at--1015--9631Chr04:34782434..34782458 (25 bp)
TCAGGGTCAAGGTCTGGGCCTTCAA
LOC_Os04g58850
Os.7901.1.S1_at--458--1651Chr04:34782335..34782359 (25 bp)
AGCGCACCGACTGCAAAGTCTGGTT
LOC_Os04g58850
Os.7901.1.S1_at--771--9471Chr04:34782311..34782335 (25 bp)
TCTGATTTCGATGGTTGGTTCCGCT
LOC_Os04g58850
Os.7901.1.S1_at--933--7931Chr04:34782276..34782300 (25 bp)
GGATTACTATTAGCCAGCACTGCTT
LOC_Os04g58850
Os.7901.1.S1_at--364--1491Chr04:34782261..34782285 (25 bp)
AGCACTGCTTCCAGTATGGACGGAT
LOC_Os04g58850
Os.7901.1.S1_at--911--9991Chr04:34782199..34782223 (25 bp)
TAGCTCGCCGGATGTTGCTGTACAT
LOC_Os04g58850
Os.7901.1.S1_at--1115--2091Chr04:34782178..34782202 (25 bp)
ACATCGCTGTGGTTTAGGTGGTTAC
LOC_Os04g58850
Os.7901.1.S1_at--227--7731Chr04:34782162..34782186 (25 bp)
GGTGGTTACATATCTTCTAGCCCTT
LOC_Os04g58850
Os.7901.1.S1_at--952--6951Chr04:34782137..34782161 (25 bp)
GTAGCTAGCGCTTGTCATGCACATA
LOC_Os04g58850
Os.7901.1.S1_at--416--9391Chr04:34782109..34782133 (25 bp)
TCGATCCATGTCTTGTTCTTCTTAG
LOC_Os04g58850
Os.7901.1.S1_at--654--9931Chr04:34782063..34782087 (25 bp)
TACGGCTTACTTACTGCTGTTCAGA
LOC_Os04g58850
Target Sequence 
TCAGGGTCAAGGTCTGGGCCTTCAAGGTTCCCGGACCCAAGGCCAAGATCAGCTGCCCCATCACCGTCCCAGCGTCCGCC
CCCAACGCCCCCGCATTCCAGCGCACCGACTGCAAAGTCTGGTTCTGATTTCGATGGTTGGTTCCGCTTCGCATTTGGGG
ATTACTATTAGCCAGCACTGCTTCCAGTATGGACGGATGGATTCTTTTGTTTCTTTCGATTTGTTGATGAGGGATTAGCT
CGCCGGATGTTGCTGTACATCGCTGTGGTTTAGGTGGTTACATATCTTCTAGCCCTTGTAGCTAGCGCTTGTCATGCACA
TATTATCGATCCATGTCTTGTTCTTCTTAGTTTTTTCCCCTTTCTTTTGGGTACGGCTTACTTACTGCTGTTCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7901.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis