Browse Element(s) Details


Os.10979.1.S1_at

Description gb:AK065262.1
DB_XREF= gi:32975280
TID=Os.10979.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10979 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013002J24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002J24, full insert sequence.
FL= gb:AK065262.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5883011/11Ribosome biogenesis regulatory protein containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g58780Os.20911.1.S1_at11/114+34739546..34751031pentatricopeptide, putative, expressed
LOC_Os04g58780Os.22699.1.S1_at3/114+34739546..34751031pentatricopeptide, putative, expressed
LOC_Os04g58790Os.14127.1.S1_at1/114+34752981..34753226hypothetical protein
LOC_Os04g58800Os.35576.1.S1_at11/114+34756595..34758671Ubiquitin-conjugating enzyme spm2, putative, expressed
LOC_Os04g58810Os.140.3.S1_x_at11/114+34761534..34762752CAF1 family ribonuclease containing protein, expressed
LOC_Os04g58820Os.7191.1.A1_at11/114+34769918..34770911uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os04g58830Os.10979.1.S1_at11/114+34773043..34775731Ribosome biogenesis regulatory protein containing protein, expressed
LOC_Os04g58840Os.51017.1.S1_at8/114+34778015..34780007Eukaryotic aspartyl protease family protein, expressed
LOC_Os04g58850Os.7901.1.S1_at11/114+34781950..34783076Harpin-induced protein 1 containing protein, expressed
LOC_Os04g58860Os.17892.1.S1_at9/114+34791894..34793355Harpin-induced protein 1 containing protein, expressed
LOC_Os04g58870Os.18157.1.S1_at11/114+34797521..34801722Exo70 exocyst complex subunit family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10979.1.S1_at--495--2811Chr04:34773804..34773828 (25 bp)
AAGATCTCGAGGATGTTGCTGGCAT
LOC_Os04g58830
Os.10979.1.S1_at--291--6291Chr04:34773793..34773817 (25 bp)
GATGTTGCTGGCATGGCTTCATCAG
LOC_Os04g58830
Os.10979.1.S1_at--699--9651Chr04:34773772..34773796 (25 bp)
TCAGCAACAGCTAGTGGTGGGAAGT
LOC_Os04g58830
Os.10979.1.S1_at--233--10031Chr04:34773605..34773722 (25 bp)
TAGAAAGTTCCTCCCTGTTGTTGAA
LOC_Os04g58830
Os.10979.1.S1_at--762--9091Chr04:34773530..34773554 (25 bp)
TGCTCTGCTGGCCAAAAGTTCTGAG
LOC_Os04g58830
Os.10979.1.S1_at--481--6611Chr04:34773381..34773517 (25 bp)
GTTGGCAGGGCAATTACGATGTACA
LOC_Os04g58830
Os.10979.1.S1_at--169--8171Chr04:34773322..34773346 (25 bp)
GGAAAAGTCTTCTTCATCGAACAAG
LOC_Os04g58830
Os.10979.1.S1_at--362--531Chr04:34773307..34773331 (25 bp)
ATCGAACAAGCTGAAGCCCCAGAAG
LOC_Os04g58830
Os.10979.1.S1_at--408--5931Chr04:34773212..34773236 (25 bp)
GAGCATAGTTTTCGAGACTCAAGGA
LOC_Os04g58830
Os.10979.1.S1_at--50--2251Chr04:34773179..34773203 (25 bp)
AAATTTTGCTGTCTGTTTGTCCAAT
LOC_Os04g58830
Os.10979.1.S1_at--1156--7251Chr04:34773161..34773185 (25 bp)
GTCCAATTTGAACACATCGGAGAAA
LOC_Os04g58830
Target Sequence 
AAGATCTCGAGGATGTTGCTGGCATGGCTTCATCAGCAACAGCTAGTGGTGGGAAGTTCGATGAAAAATTGCCTGGCGAG
AAACCTCCAAAAAATCCTGGCAAACATAGAAAGTTCCTCCCTGTTGTTGAAGGAAAAGGAATGGGCAACCAGGAGAAACA
GCAAAATGACAAAATCTTGAATGCTCTGCTGGCCAAAAGTTCTGAGGATCAAATGGATGTTGGCAGGGCAATTACGATGT
ACAAGGTGAAGAAGGAGAAACAAAGGAGGAAAGATAAGGAAAAGTCTTCTTCATCGAACAAGCTGAAGCCCCAGAAGAAA
ACACTCAAGAAATCTTCGAAGAAAAAGGCTTAGGTTAATTACATTNTTCGGACCTGCTGTAGGAGGTGAGCATAGTTTTC
GAGACTCAAGGAGAATTGGCAAATTTTGCTGTCTGTTTGTCCAATTTGAACACATCGGAGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10979.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis