Browse Element(s) Details


Os.20911.1.S1_at

Description gb:AK066014.1
DB_XREF= gi:32976032
TID=Os.20911.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20911 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013049M21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013049M21, full insert sequence.
FL= gb:AK066014.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5878011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g58740OsAffx.14473.1.S1_at11/114+34720167..34720562hypothetical protein
LOC_Os04g58750Os.9165.1.S1_at11/114+34723921..34730647Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os04g58760OsAffx.26659.1.S1_at10/114+34731540..34732359plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os04g58760OsAffx.26659.1.S1_x_at10/114+34731540..34732359plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os04g58770OsAffx.4212.1.A1_at10/114+34737378..34739004hypothetical protein
LOC_Os04g58770OsAffx.8714.1.S1_at1/114+34737378..34739004hypothetical protein
LOC_Os04g58780Os.20911.1.S1_at11/114+34739546..34751031pentatricopeptide, putative, expressed
LOC_Os04g58780Os.22699.1.S1_at3/114+34739546..34751031pentatricopeptide, putative, expressed
LOC_Os04g58790Os.14127.1.S1_at1/114+34752981..34753226hypothetical protein
LOC_Os04g58800Os.35576.1.S1_at11/114+34756595..34758671Ubiquitin-conjugating enzyme spm2, putative, expressed
LOC_Os04g58810Os.140.3.S1_x_at11/114+34761534..34762752CAF1 family ribonuclease containing protein, expressed
LOC_Os04g58820Os.7191.1.A1_at11/114+34769918..34770911uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os04g58830Os.10979.1.S1_at11/114+34773043..34775731Ribosome biogenesis regulatory protein containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20911.1.S1_at--920--3771Chr04:34747358..34747382 (25 bp)
CTCTGCTGCGTTTCTTCAAGAGCAA
LOC_Os04g58780
Os.20911.1.S1_at--672--1411Chr04:34747411..34747435 (25 bp)
AGACACAGGCTGTCAATGCAACAGA
LOC_Os04g58780
Os.20911.1.S1_at--994--651Chr04:34747426..34747450 (25 bp)
ATGCAACAGACGAAGCTTACTCAGT
LOC_Os04g58780
Os.20911.1.S1_at--658--2011Chr04:34747444..34747468 (25 bp)
ACTCAGTTATGCGTGTAGCTGTACA
LOC_Os04g58780
Os.20911.1.S1_at--139--5131Chr04:34750608..34750629 (22 bp)
GCACAGAGAGGCCAACAGGAGCTAT
LOC_Os04g58780
Os.20911.1.S1_at--277--6671Chr04:34750638..34750662 (25 bp)
GTTCCGATTGCTGTTAATTACCTGG
LOC_Os04g58780
Os.20911.1.S1_at--380--5411Chr04:34750701..34750725 (25 bp)
GAAGCGCCAAGCTGCTGTGAACAAC
LOC_Os04g58780
Os.20911.1.S1_at--88--8751Chr04:34750742..34750766 (25 bp)
TGTAATTTCCTCTCTAGTCTCTAGA
LOC_Os04g58780
Os.20911.1.S1_at--220--6591Chr04:34750837..34750861 (25 bp)
GATTGTATAGTACCCGCCCATTGAG
LOC_Os04g58780
Os.20911.1.S1_at--36--251Chr04:34750884..34750908 (25 bp)
ATATACCCCTGCATGTGTCACTGAC
LOC_Os04g58780
Os.20911.1.S1_at--27--7111Chr04:34750900..34750924 (25 bp)
GTCACTGACATCATTTGGTCGACAT
LOC_Os04g58780
Target Sequence 
CTCTGCTGCGTTTCTTCAAGAGCAACAGTCAGTAACAGTTCTACTGGGACTGAAGACACAGGCTGTCAATGCAACAGACG
AAGCTTACTCAGTTATGCGTGTAGCTGTACATATCAATGGCTGGCACAGAGAGGCCAACAGGAGCTATAAAATGATGTTC
CGATTGCTGTTAATTACCTGGAAACTGNACTGTACTGGGCGAGTGATGAAGGTAGGATGGAAGCGCCAAGCTGCTGTGAA
CAACTGAGGGAAAATTCAGGTGTAATTTCCTCTCTAGTCTCTAGAATTACAAGGCAAGGTATATATTTTTAACGTTTTTG
TTTATGAATAGAAGATGAGCTATGCTTAGATTATGGATTGTATAGTACCCGCCCATTGAGGCTGGGCTGGGTCCTCCAGA
ATATATACCCCTGCATGTGTCACTGACATCATTTGGTCGACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20911.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis