Browse Element(s) Details


OsAffx.26659.1.S1_x_at

Description tigr:9632.m05743
TID=OsAffx.26659.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to BT003725 At5g15290
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5876010/11plant integral membrane protein TIGR01569 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g58730Os.7934.1.S1_at11/114+34703127..34707435AT hook motif family protein, expressed
LOC_Os04g58740OsAffx.14473.1.S1_at11/114+34720167..34720562hypothetical protein
LOC_Os04g58750Os.9165.1.S1_at11/114+34723921..34730647Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os04g58760OsAffx.26659.1.S1_at10/114+34731540..34732359plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os04g58760OsAffx.26659.1.S1_x_at10/114+34731540..34732359plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os04g58770OsAffx.4212.1.A1_at10/114+34737378..34739004hypothetical protein
LOC_Os04g58770OsAffx.8714.1.S1_at1/114+34737378..34739004hypothetical protein
LOC_Os04g58780Os.20911.1.S1_at11/114+34739546..34751031pentatricopeptide, putative, expressed
LOC_Os04g58780Os.22699.1.S1_at3/114+34739546..34751031pentatricopeptide, putative, expressed
LOC_Os04g58790Os.14127.1.S1_at1/114+34752981..34753226hypothetical protein
LOC_Os04g58800Os.35576.1.S1_at11/114+34756595..34758671Ubiquitin-conjugating enzyme spm2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26659.1.S1_x_at--499--8471NONE
TGGCGCCACGCAAGGTTCTTCTTGG
NONE
OsAffx.26659.1.S1_x_at--478--1011Chr04:34731929..34731953 (25 bp)
AGGTTCTTCTTGGTGGCGAACGCGA
LOC_Os04g58760
OsAffx.26659.1.S1_x_at--933--4091Chr04:34731945..34731969 (25 bp)
CGAACGCGATCGTGGCAGGGTACCT
LOC_Os04g58760
OsAffx.26659.1.S1_x_at--777--6391Chr04:34731952..34731976 (25 bp)
GATCGTGGCAGGGTACCTGGTGCTG
LOC_Os04g58760
OsAffx.26659.1.S1_x_at--711--4491Chr04:34731992..34732016 (25 bp)
GCCGTCCTCGTGATAAGGCCTCAGA
LOC_Os04g58760
OsAffx.26659.1.S1_x_at--173--7251Chr04:34731995..34732019 (25 bp)
GTCCTCGTGATAAGGCCTCAGACCA
LOC_Os04g58760
OsAffx.26659.1.S1_x_at--203--9431Chr04:34731999..34732023 (25 bp)
TCGTGATAAGGCCTCAGACCATCGG
LOC_Os04g58760
OsAffx.26659.1.S1_x_at--692--8831Chr04:34732002..34732026 (25 bp)
TGATAAGGCCTCAGACCATCGGCCT
LOC_Os04g58760
OsAffx.26659.1.S1_x_at--585--2951Chr04:34732006..34732030 (25 bp)
AAGGCCTCAGACCATCGGCCTCAGG
LOC_Os04g58760
OsAffx.26659.1.S1_x_at--882--9631Chr04:34732026..34732050 (25 bp)
TCAGGCTTCTCCTGCTCGTCTGCGA
LOC_Os04g58760
OsAffx.26659.1.S1_x_at--285--4811Chr04:34732039..34732152 (25 bp)
GCTCGTCTGCGACATGATCATGGCG
LOC_Os04g58760
Target Sequence 
TGGCGCCACGCAAGGTTCTTCTTGGTGGCGAACGCGATCGTGGCAGGGTACCTGGTGCTGTCCCTCCCTTTCTCCGCCGT
CCTCGTGATAAGGCCTCAGACCATCGGCCTCAGGCTTCTCCTGCTCGTCTGCGACATGATCATGGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26659.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis