Browse Element(s) Details


Os.7934.1.S1_at

Description gb:AK100309.1
DB_XREF= gi:32985518
TID=Os.7934.1
CNT=54
FEA=FLmRNA
TIER=FL+Stack
STK=9
UG=Os.7934 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033097P11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023078J11, full insert sequence.
FL= gb:AK100309.1 gb:AK060880.1 gb:AK099749.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5873011/11AT hook motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g58690Os.54739.1.S1_at11/114+34673898..34679728Adenosine-deaminase domain containing protein, expressed
LOC_Os04g58690Os.53243.1.S1_x_at11/114+34673898..34679728Adenosine-deaminase domain containing protein, expressed
LOC_Os04g58700Os.10107.1.S1_at11/114+34682562..34688298leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os04g58700Os.10107.2.S1_x_at10/114+34682562..34688298leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os04g58710Os.22374.1.S2_a_at11/114+34689376..34691411AMP-binding enzyme family protein, expressed
LOC_Os04g58720Os.9734.1.S1_at11/114+34696725..34700925Phosphoribosylanthranilate transferase, putative, expressed
LOC_Os04g58730Os.7934.1.S1_at11/114+34703127..34707435AT hook motif family protein, expressed
LOC_Os04g58740OsAffx.14473.1.S1_at11/114+34720167..34720562hypothetical protein
LOC_Os04g58750Os.9165.1.S1_at11/114+34723921..34730647Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os04g58760OsAffx.26659.1.S1_at10/114+34731540..34732359plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os04g58760OsAffx.26659.1.S1_x_at10/114+34731540..34732359plant integral membrane protein TIGR01569 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7934.1.S1_at--1144--7331Chr04:34704114..34704138 (25 bp)
GTGCAGCCCCGAGAGGCATATCATT
LOC_Os04g58730
Os.7934.1.S1_at--1005--3571Chr04:34704098..34704122 (25 bp)
CATATCATTGGAGGCGTTCTCGGCG
LOC_Os04g58730
Os.7934.1.S1_at--411--8051Chr04:34704074..34704098 (25 bp)
GGAGCATTGGTAGCTGCCAGCACCG
LOC_Os04g58730
Os.7934.1.S1_at--827--5871Chr04:34703523..34703547 (25 bp)
GAGCTCCGGCCATAACCAAAATCTA
LOC_Os04g58730
Os.7934.1.S1_at--649--4451Chr04:34703463..34703487 (25 bp)
GCCTAGCTCCGGGATATTTGACACG
LOC_Os04g58730
Os.7934.1.S1_at--1031--911Chr04:34703406..34703430 (25 bp)
AGGCTAGCTTCATCTCTCAATTTGT
LOC_Os04g58730
Os.7934.1.S1_at--117--3751Chr04:34703391..34703415 (25 bp)
CTCAATTTGTCGACTCTTCCATATG
LOC_Os04g58730
Os.7934.1.S1_at--693--5711Chr04:34703380..34703404 (25 bp)
GACTCTTCCATATGTGCTCCAGAAA
LOC_Os04g58730
Os.7934.1.S1_at--572--3171Chr04:34703321..34703345 (25 bp)
AATTGTACTCCTCTCTGTAATAGCC
LOC_Os04g58730
Os.7934.1.S1_at--424--9991Chr04:34703301..34703325 (25 bp)
TAGCCTGTTCAGTTTTTGAGCCGTT
LOC_Os04g58730
Os.7934.1.S1_at--64--4991Chr04:34703223..34703247 (25 bp)
GCATGCTCAGAGTTGTGTAATCCCA
LOC_Os04g58730
Target Sequence 
GTGCAGCCCCGAGAGGCATATCATTGGAGGCGTTCTCGGCGGAGCATTGGTAGCTGCCAGCACCGTTCAGGTGGTACTTG
GGAGTTTCGTGCAGGGAGGGTCGAAGCCCAAGTCGAAGAAGGCCGGGAAACAGCAGCAGCAACAGGCGGCGGCGGCGGCC
TTCAGCTCGGACTCGCTGACCGGAGGAGGGCAGGACGCGTCGCCGAGCTCCGGCCATAACCAAAATCTAACGCCGCCGCC
CCCTGTAACAACGACGGGAGGGTGGCCTAGCTCCGGGATATTTGACACGAGAAGTTCCAACATTGATATCAACTCATCTA
GAGGCTAGCTTCATCTCTCAATTTGTCGACTCTTCCATATGTGCTCCAGAAATTTGTTTTTCTGATTCCCAAAGAATTAC
CCCCAAAATTGTACTCCTCTCTGTAATAGCCTGTTCAGTTTTTGAGCCGTTAATTCTTATAGATTATTATTATTCACTAG
GCAACGTTGCATTCATGCATGCATGCATGCTCAGAGTTGTGTAATCCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7934.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis