Browse Element(s) Details


Os.22374.1.S2_a_at

Description gb:AK105693.1
DB_XREF= gi:32990902
TID=Os.22374.1
CNT=50
FEA=FLmRNA
TIER=FL+Stack
STK=12
UG=Os.22374 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) partial mRNA for MYB29 protein
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-201-C07, full insert sequence.
FL= gb:AK070871.1 gb:AK105693.1 gb:AK119512.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5871011/11AMP-binding enzyme family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g58650NANA4+34665348..34666184retrotransposon protein, putative, unclassified
LOC_Os04g58660NANA4+34666530..34668162retrotransposon protein, putative, unclassified
LOC_Os04g58669NANA4+34671809..34672070NA
LOC_Os04g58680NANA4+34672753..34673130Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os04g58690Os.54739.1.S1_at11/114+34673898..34679728Adenosine-deaminase domain containing protein, expressed
LOC_Os04g58690Os.53243.1.S1_x_at11/114+34673898..34679728Adenosine-deaminase domain containing protein, expressed
LOC_Os04g58700Os.10107.1.S1_at11/114+34682562..34688298leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os04g58700Os.10107.2.S1_x_at10/114+34682562..34688298leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os04g58710Os.22374.1.S2_a_at11/114+34689376..34691411AMP-binding enzyme family protein, expressed
LOC_Os04g58720Os.9734.1.S1_at11/114+34696725..34700925Phosphoribosylanthranilate transferase, putative, expressed
LOC_Os04g58730Os.7934.1.S1_at11/114+34703127..34707435AT hook motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009411biological_processresponse to UV
GO:0009611biological_processresponse to wounding
GO:0009621biological_processresponse to pathogenic fungi
GO:0009698biological_processphenylpropanoid metabolism
GO:0016207molecular_function4-coumarate-CoA ligase activity
GO:0016208molecular_functionAMP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22374.1.S2_a_at--760--7291Chr04:34689675..34689699 (25 bp)
GTGCTGCCCACCAAGGCGTAATAAA
LOC_Os04g58710
Os.22374.1.S2_a_at--950--4311Chr04:34689660..34689684 (25 bp)
GCGTAATAAAAGTCTCTACCTCCCG
LOC_Os04g58710
Os.22374.1.S2_a_at--677--531Chr04:34689627..34689651 (25 bp)
ATCGCATGCCATCGTCCTACTGTAT
LOC_Os04g58710
Os.22374.1.S2_a_at--428--4331Chr04:34689619..34689643 (25 bp)
CCATCGTCCTACTGTATCTATCAAG
LOC_Os04g58710
Os.22374.1.S2_a_at--827--7251Chr04:34689614..34689638 (25 bp)
GTCCTACTGTATCTATCAAGTTCGT
LOC_Os04g58710
Os.22374.1.S2_a_at--256--1971Chr04:34689609..34689633 (25 bp)
ACTGTATCTATCAAGTTCGTGTCTT
LOC_Os04g58710
Os.22374.1.S2_a_at--90--9731Chr04:34689599..34689623 (25 bp)
TCAAGTTCGTGTCTTGATTTGATTT
LOC_Os04g58710
Os.22374.1.S2_a_at--113--6531Chr04:34689584..34689608 (25 bp)
GATTTGATTTTTTCTGGTTACTTCG
LOC_Os04g58710
Os.22374.1.S2_a_at--274--8811Chr04:34689580..34689604 (25 bp)
TGATTTTTTCTGGTTACTTCGGCTA
LOC_Os04g58710
Os.22374.1.S2_a_at--592--7711Chr04:34689570..34689594 (25 bp)
TGGTTACTTCGGCTACAACCAGTAG
LOC_Os04g58710
Os.22374.1.S2_a_at--444--9831Chr04:34689557..34689581 (25 bp)
TACAACCAGTAGCTTCGTTTAGGGT
LOC_Os04g58710
Target Sequence 
GTGCTGCCCACCAAGGCGTAATAAAAGTCTCTACCTCCCGACCAACCCATCGCATGCCATCGTCCTACTGTATCTATCAA
GTTCGTGTCTTGATTTGATTTTTTCTGGTTACTTCGGCTACAACCAGTAGCTTCGTTTAGGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22374.1.S2_a_at     

Putative homologies in rice

Putative homologies in arabidopsis