Browse Element(s) Details


Os.54739.1.S1_at

Description gb:AK106642.1
DB_XREF= gi:32991851
TID=Os.54739.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54739 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-113-E06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-113-E06, full insert sequence.
FL= gb:AK106642.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5869011/11Adenosine-deaminase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g58620Os.5720.1.S1_s_at11/114+34641351..34650524K+ efflux antiporter, putative, expressed
LOC_Os04g58620Os.5720.1.S2_at11/114+34641351..34650524K+ efflux antiporter, putative, expressed
LOC_Os04g58620Os.51073.1.S1_at11/114+34641351..34650524K+ efflux antiporter, putative, expressed
LOC_Os04g58630Os.27360.1.A1_at10/114+34650932..34658107DNA mismatch repair protein MSH3, putative, expressed
LOC_Os04g58630OsAffx.9818.1.S1_x_at1/114+34650932..34658107DNA mismatch repair protein MSH3, putative, expressed
LOC_Os04g58640Os.12933.1.S1_at11/114+34658756..34662553nudix type motif 21, putative, expressed
LOC_Os04g58650NANA4+34665348..34666184retrotransposon protein, putative, unclassified
LOC_Os04g58660NANA4+34666530..34668162retrotransposon protein, putative, unclassified
LOC_Os04g58669NANA4+34671809..34672070NA
LOC_Os04g58680NANA4+34672753..34673130Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os04g58690Os.54739.1.S1_at11/114+34673898..34679728Adenosine-deaminase domain containing protein, expressed
LOC_Os04g58690Os.53243.1.S1_x_at11/114+34673898..34679728Adenosine-deaminase domain containing protein, expressed
LOC_Os04g58700Os.10107.1.S1_at11/114+34682562..34688298leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os04g58700Os.10107.2.S1_x_at10/114+34682562..34688298leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os04g58710Os.22374.1.S2_a_at11/114+34689376..34691411AMP-binding enzyme family protein, expressed
LOC_Os04g58720Os.9734.1.S1_at11/114+34696725..34700925Phosphoribosylanthranilate transferase, putative, expressed
LOC_Os04g58730Os.7934.1.S1_at11/114+34703127..34707435AT hook motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006396biological_processRNA processing
GO:0003723molecular_functionRNA binding
GO:0004000molecular_functionadenosine deaminase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54739.1.S1_at--201--6231Chr04:34679147..34679171 (25 bp)
GATGGCGCCTCTTGTTCATGAAGGA
LOC_Os04g58690
Os.54739.1.S1_at--587--2411Chr04:34679227..34679251 (25 bp)
AAAAACTGAATTTCTCACCCTCTTG
LOC_Os04g58690
Os.54739.1.S1_at--820--10851Chr04:34679249..34679273 (25 bp)
TTGGTGCTATCTTTCTTGTTACTTT
LOC_Os04g58690
Os.54739.1.S1_at--456--9671Chr04:34679340..34679364 (25 bp)
TCACCTTCCTTTTTCTTGTCAATTT
LOC_Os04g58690
Os.54739.1.S1_at--709--9171Chr04:34679422..34679446 (25 bp)
TGCCGAGTGGCCTAATACTGCGTGC
LOC_Os04g58690
Os.54739.1.S1_at--303--7291Chr04:34679443..34679467 (25 bp)
GTGCCTTGCGCCATCAGAAGAGCTG
LOC_Os04g58690
Os.54739.1.S1_at--335--251Chr04:34679482..34679506 (25 bp)
ATATCTTAGTTGGTGTGGCCTCCTC
LOC_Os04g58690
Os.54739.1.S1_at--233--591Chr04:34679572..34679596 (25 bp)
ATCCAAAATCTAATCTCCTCATCTT
LOC_Os04g58690
Os.54739.1.S1_at--518--10691Chr04:34679595..34679619 (25 bp)
TTGCTAATCAACCATTGCCTTTGCC
LOC_Os04g58690
Os.54739.1.S1_at--262--6151Chr04:34679627..34679651 (25 bp)
GAGGCCTACTTTTGGCTTCCTTGAA
LOC_Os04g58690
Os.54739.1.S1_at--378--2471Chr04:34679686..34679710 (25 bp)
AACACTTGGTGCTCACTGCAATGAT
LOC_Os04g58690
Target Sequence 
GATGGCGCCTCTTGTTCATGAAGGAAAAGTGGTGATGACCGAACTTGCAAGTTTTATCTGCAATCCTTTTGTTGCTTCTG
AAAAACTGAATTTCTCACCCTCTTGGTGCTATCTTTCTTGTTACTTTTGGATTAATGGGCCTTTTGTAGTGAATTTCTCA
CCAATCTTGATATATTTCTGAAAACTGAATTTCTCACCTTCCTTTTTCTTGTCAATTTTGGATTTAATGGGCTATTTTGT
TTGAGATATAATCAGATGAAGGGTTGGTGGTCGAGTGCCGAGTGGCCTAATACTGCGTGCCTTGCGCCATCAGAAGAGCT
GTGGACACAAACATGATATCTTAGTTGGTGTGGCCTCCTCAACCATCAAGCAATACAGACAAGGACCCCTCCAACTGCAA
GAAAAACTGCCATTTTACAGCTCAAATCCAAAATCTAATCTCCTCATCTTGCTAATCAACCATTGCCTTTGCCAGAAGGA
GAGGCCTACTTTTGGCTTCCTTGAATTATGGATTTCAATAAGCTGGTTGGAAGATGAGGAACACTTGGTGCTCACTGCAA
TGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54739.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis