Browse Element(s) Details


Os.9165.1.S1_at

Description gb:AK101506.1
DB_XREF= gi:32986715
TID=Os.9165.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9165 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033044N06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033044N06, full insert sequence.
FL= gb:AK101506.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5875011/11Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os08g280801/11Coatomer delta subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g58720Os.9734.1.S1_at11/114+34696725..34700925Phosphoribosylanthranilate transferase, putative, expressed
LOC_Os04g58730Os.7934.1.S1_at11/114+34703127..34707435AT hook motif family protein, expressed
LOC_Os04g58740OsAffx.14473.1.S1_at11/114+34720167..34720562hypothetical protein
LOC_Os04g58750Os.9165.1.S1_at11/114+34723921..34730647Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os04g58760OsAffx.26659.1.S1_at10/114+34731540..34732359plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os04g58760OsAffx.26659.1.S1_x_at10/114+34731540..34732359plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os04g58770OsAffx.4212.1.A1_at10/114+34737378..34739004hypothetical protein
LOC_Os04g58770OsAffx.8714.1.S1_at1/114+34737378..34739004hypothetical protein
LOC_Os04g58780Os.20911.1.S1_at11/114+34739546..34751031pentatricopeptide, putative, expressed
LOC_Os04g58780Os.22699.1.S1_at3/114+34739546..34751031pentatricopeptide, putative, expressed
LOC_Os04g58790Os.14127.1.S1_at1/114+34752981..34753226hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9165.1.S1_at--471--5071Chr04:34730138..34730162 (25 bp)
GCAGCTGTTGTTCATTTGTCAATTT
LOC_Os04g58750
Os.9165.1.S1_at--800--10271Chr04:34730192..34730216 (25 bp)
TTTGCACGTGCGGAAGGTCGTCCCT
LOC_Os04g58750
Os.9165.1.S1_at--353--7251Chr04:34730211..34730235 (25 bp)
GTCCCTCGTCCATATGTTCATGTAG
LOC_Os04g58750
Os.9165.1.S1_at--869--5551Chr04:34730251..34730275 (25 bp)
GAAAGCGACAGCAGAGGCCCTGAAA
LOC_Os04g58750
Os.9165.1.S1_at--293--5031Chr04:34730336..34730360 (25 bp)
GCAAAACTTGGTCTTGGTTCCTCCT
LOC_Os04g58750
Os.9165.1.S1_at--579--8571Chr04:34730350..34730374 (25 bp)
TGGTTCCTCCTACCCAAGAAAATGG
LOC_Os04g58750
Os.9165.1.S1_at--665--751Chr04:34730425..34730449 (25 bp)
ATGTCAATCTTGCTGGTAGGCGTGT
LOC_Os04g58750
Os.9165.1.S1_at--328--7031Chr04:34730456..34730480 (25 bp)
GTACAGCAAGCGTTGTGTTTTCTCC
LOC_Os04g58750
Os.9165.1.S1_at--551--7431Chr04:34730470..34730494 (25 bp)
GTGTTTTCTCCAGGTCATTTTTCTT
LOC_Os04g58750
Os.9165.1.S1_at--225--5332Chr04:34730587..34730611 (25 bp)
GAAGGGCTTGGTTCATTTGCAAATC
LOC_Os04g58750
Os.9165.1.S1_at--200--9031Chr04:34730604..34730628 (25 bp)
TGCAAATCTTGGACGGGCTCATCAC
LOC_Os04g58750
Target Sequence 
GCAGCTGTTGTTCATTTGTCAATTTGGCTAGGGGTTTCTTTAACCTTGTTCTGATTTGCACGTGCGGAAGGTCGTCCCTC
GTCCATATGTTCATGTAGGATGTATATATGGAAGAAAGCGACAGCAGAGGCCCTGAAAGAGATTGCAAAGACATTGAAGG
TGAATAAGTCCTGCAGACACGACATTGATGGGGGAAGGGCAAAACTTGGTCTTGGTTCCTCCTACCCAAGAAAATGGGAA
AACGAAAAAAAAAAAGGGATTGTTATCAAAAGGCGTTGTTGATGTACATGTCAATCTTGCTGGTAGGCGTGTAAACTTGT
ACAGCAAGCGTTGTGTTTTCTCCAGGTCATTTTTCTTTTCTTTTTGGTTTTGTTTCATATGTGTTAGCCCCCATTGGTAT
ATTCTAGAGAAAATCGTGGAATTCTTGTCAGGCGGAAATTGGCAGTGTTGAAGGGCTTGGTTCATTTGCAAATCTTGGAC
GGGCTCATCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9165.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis