Browse Element(s) Details


Os.51336.1.S1_at

Description gb:AK062587.1
DB_XREF= gi:32972605
TID=Os.51336.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51336 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-100-F10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-100-F10, full insert sequence.
FL= gb:AK062587.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5861011/11retrotransposon protein, putative, unclassified, expressed
LOC_Os11g459201/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g58580Os.53677.1.S1_at11/114+34609185..34612135phosphomannomutase, putative, expressed
LOC_Os04g58580Os.8518.1.S1_x_at6/114+34609185..34612135phosphomannomutase, putative, expressed
LOC_Os04g58590Os.53405.1.S1_at11/114+34612987..34618277RNA recognition motif family protein, expressed
LOC_Os04g58600Os.18048.1.S1_at11/114+34620431..34624271Asparaginase family protein, expressed
LOC_Os04g58610Os.51336.1.S1_at11/114+34633903..34635823retrotransposon protein, putative, unclassified, expressed
LOC_Os04g58620Os.5720.1.S1_s_at11/114+34641351..34650524K+ efflux antiporter, putative, expressed
LOC_Os04g58620Os.5720.1.S2_at11/114+34641351..34650524K+ efflux antiporter, putative, expressed
LOC_Os04g58620Os.51073.1.S1_at11/114+34641351..34650524K+ efflux antiporter, putative, expressed
LOC_Os04g58630Os.27360.1.A1_at10/114+34650932..34658107DNA mismatch repair protein MSH3, putative, expressed
LOC_Os04g58630OsAffx.9818.1.S1_x_at1/114+34650932..34658107DNA mismatch repair protein MSH3, putative, expressed
LOC_Os04g58640Os.12933.1.S1_at11/114+34658756..34662553nudix type motif 21, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51336.1.S1_at--1077--9093Chr06:3555779..3555803 (25 bp)
TGCTCTGAAATGCTCTGTTCTGTTC
NONE
Os.51336.1.S1_at--508--9615Chr06:3555828..3555852 (25 bp)
TCATCTGTGATTCGATCTAGGGTTC
NONE
Os.51336.1.S1_at--777--5011Chr04:34634228..34634252 (25 bp)
GCAGGTGGTGGTATCTCGCTAGCAT
LOC_Os04g58610
Os.51336.1.S1_at--308--471Chr04:34634216..34634240 (25 bp)
ATCTCGCTAGCATTGGCCGAATGGA
LOC_Os04g58610
Os.51336.1.S1_at--393--8211Chr04:34634194..34634218 (25 bp)
GGAATGGACATGGACACGCCTGCTC
LOC_Os04g58610
Os.51336.1.S1_at--787--4271Chr04:34634176..34634200 (25 bp)
CCTGCTCTCTTTTTAAAGGCTGCCA
LOC_Os04g58610
Os.51336.1.S1_at--120--8331Chr04:34634159..34634183 (25 bp)
GGCTGCCATCCTATACTTTTATACG
LOC_Os04g58610
Os.51336.1.S1_at--643--10171Chr04:34634130..34634154 (25 bp)
TATACGCCGCAATCTTCTTGAATGG
LOC_Os04g58610
Os.51336.1.S1_at--15--2591Chr04:34634071..34634095 (25 bp)
AACGGTGGAGATCCCTTCAGTTGAT
LOC_Os04g58610
Os.51336.1.S1_at--347--3111Chr04:34634042..34634066 (25 bp)
AATATACCTGTGCTTCTATCTGCTA
LOC_Os04g58610
Os.51336.1.S1_at--402--4575Chr12:18074993..18075016 (24 bp)
GCGCGCATGCGTGGGCACTTATATT
NONE
Target Sequence 
TGCTCTGAAATGCTCTGTTCTGTTCTGTTCTTCCTCCTCATCCCCAATTTCATCTGTGATTCGATCTAGGGTTCGTAACA
GAAGCTTGCGGGGAGTCGGGACAGCGTTGAAGGTAGAGCGGAGGAGAGCGGCCTGCGGCCCGCGTGGGAAGCGGCACGGC
GGACGGTGATCAGCCTTGGCGAGAGGAGGAGGGGGACGTGGGCTTCGATTGGAGGAGCAGGTGGTGGTATCTCGCTAGCA
TTGGCCGAATGGAATGGACATGGACACGCCTGCTCTCTTTTTAAAGGCTGCCATCCTATACTTTTATACGTACATATACG
CCGCAATCTTCTTGAATGGCAAGAAACCTCTCTCAACCGACGGATCATGAATCAACGGTGGAGATCCCTTCAGTTGATCA
GTAATATACCTGTGCTTCTATCTGCTATGTTTTTGGAAAACTAGGAAGGTGGCCCGCGCGCATGCGTGGGCACTTATATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51336.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis