Browse Element(s) Details


Os.17778.2.S1_x_at

Description gb:AK107890.1
DB_XREF= gi:32993099
TID=Os.17778.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17778 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-134-E06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-134-E06, full insert sequence.
FL= gb:AK107890.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5841011/11MutS domain V family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g58350OsAffx.14466.1.S1_at11/114+34506072..34511325Transcription factor tfb2 family protein, expressed
LOC_Os04g58360OsAffx.26654.1.S1_x_at11/114+34511991..34512380hypothetical protein
LOC_Os04g58370OsAffx.14467.1.S1_at11/114+34513721..34514254hypothetical protein
LOC_Os04g58380Os.27077.1.A1_at10/114+34514531..34517028expressed protein
LOC_Os04g58390Os.18070.1.S1_at4/114+34519017..34523242allantoinase, putative, expressed
LOC_Os04g58390Os.30557.2.S2_x_at1/114+34519017..34523242allantoinase, putative, expressed
LOC_Os04g58400OsAffx.14468.1.S1_at8/114+34524408..34530702tRNA synthetases class I family protein, expressed
LOC_Os04g58410Os.17778.2.S1_x_at11/114+34532434..34536998MutS domain V family protein, expressed
LOC_Os04g58410Os.17778.2.S1_at11/114+34532434..34536998MutS domain V family protein, expressed
LOC_Os04g58410Os.17778.1.S1_at11/114+34532434..34536998MutS domain V family protein, expressed
LOC_Os04g58420Os.17079.1.S1_at11/114+34542155..34544423MLO-like protein 14, putative, expressed
LOC_Os04g58420OsAffx.14469.1.S1_x_at11/114+34542155..34544423MLO-like protein 14, putative, expressed
LOC_Os04g58430NANA4+34546356..34547261hypothetical protein
LOC_Os04g58440NANA4+34548256..34549160hypothetical protein
LOC_Os04g58450OsAffx.20387.1.S1_x_at1/114+34549967..34556167retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g58460NANA4+34557648..34558010expressed protein
LOC_Os04g58470Os.8304.1.S1_at10/114+34561432..34566061expressed protein
LOC_Os04g58470OsAffx.4211.1.S1_at4/114+34561432..34566061expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0000002biological_processmitochondrial genome maintenance
GO:0006298biological_processmismatch repair
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0003684molecular_functiondamaged DNA binding
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17778.2.S1_x_at--36--9811Chr04:34532722..34532746 (25 bp)
TAACGTCGCCTGTCGCGGCGGAGAC
LOC_Os04g58410
Os.17778.2.S1_x_at--837--1371Chr04:34532893..34532917 (25 bp)
AGAGCGAGCGGCTGCTCGAACAGAC
LOC_Os04g58410
Os.17778.2.S1_x_at--603--6711Chr04:34533065..34533089 (25 bp)
GTTCGACCAATTGAAGACGCTCTCA
LOC_Os04g58410
Os.17778.2.S1_x_at--883--5791Chr04:34533080..34533104 (25 bp)
GACGCTCTCAGAGGAGACACCAGAT
LOC_Os04g58410
Os.17778.2.S1_x_at--206--5331Chr04:34533118..34533142 (25 bp)
GAAGTTGCTTCCTCGAACTGAATTT
LOC_Os04g58410
Os.17778.2.S1_x_at--352--5471Chr04:34533132..34533156 (25 bp)
GAACTGAATTTCGTAGCACTGAGCT
LOC_Os04g58410
Os.17778.2.S1_x_at--519--1971Chr04:34533159..34533183 (25 bp)
ACTGAATGCATAATTTCGAGTTAAT
LOC_Os04g58410
Os.17778.2.S1_x_at--683--7051Chr04:34533200..34533224 (25 bp)
GTAACTTTGATTAGCACTCCTGTCC
LOC_Os04g58410
Os.17778.2.S1_x_at--864--6551Chr04:34533208..34533232 (25 bp)
GATTAGCACTCCTGTCCTGCAGCTA
LOC_Os04g58410
Os.17778.2.S1_x_at--326--4851Chr04:34533229..34533253 (25 bp)
GCTACACTCCTCTTCTGGATATAAT
LOC_Os04g58410
Os.17778.2.S1_x_at--299--6511Chr04:34533246..34533270 (25 bp)
GATATAATGCAAGACTGTGACTTCT
LOC_Os04g58410
Target Sequence 
TAACGTCGCCTGTCGCGGCGGAGACTCCGGAGGCGAAGCAGATGCGGGTAGAGACGGAGGCCGCCCTGGAATGGGGCGGC
GTGTGCGCGCGGCTGGCCGGGTTCGCCTCCACCGCCGCGGGGCGCGCCGCCTGCGGAGAGGGGCGGGTGCCCGTCGGGCG
GAGCCGGGAGGAGAGCGAGCGGCTGCTCGAACAGACGGCGGCGGCCGCGCTGCTGCCTGCTCCGCTGGATTTCGGCGGCG
TGGAGGACGTGTCCGCCGCCATCGCCGCGGCGGCTGGGGCCCGGCTGCTTGCGGTGAGGGAGATATGTGGAGTCGGGCGC
AGCATCCGTGCCGCACGCAGGGTGTTCGACCAATTGAAGACGCTCTCAGAGGAGACACCAGATGGAAGGAGGTGAGGAAG
TTGCTTCCTCGAACTGAATTTCGTAGCACTGAGCTAAACTGAATGCATAATTTCGAGTTAATGATTGTAACTGTAAGTGT
AACTTTGATTAGCACTCCTGTCCTGCAGCTACACTCCTCTTCTGGATATAATGCAAGACTGTGACTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17778.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis