Browse Element(s) Details


Os.15059.1.S1_at

Description gb:AK100413.1
DB_XREF= gi:32985622
TID=Os.15059.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15059 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023087K14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023087K14, full insert sequence.
FL= gb:AK100413.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2652011/11serine/threonine-protein kinase NAK, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g26500OsAffx.18415.1.S1_x_at11/1110+13473516..13474789HAHB-1, putative
LOC_Os10g26510OsAffx.6772.1.S1_at11/1110+13480599..13482092hypothetical protein
LOC_Os10g26510Os.16463.1.S1_at2/1110+13480599..13482092hypothetical protein
LOC_Os10g26520Os.15059.1.S1_at11/1110+13492274..13497972serine/threonine-protein kinase NAK, putative, expressed
LOC_Os10g26520Os.18446.1.S1_at11/1110+13492274..13497972serine/threonine-protein kinase NAK, putative, expressed
LOC_Os10g26530OsAffx.20358.1.S1_at11/1110+13499491..13500190hypothetical protein
LOC_Os10g26540OsAffx.6774.1.S1_x_at11/1110+13501910..13504824expressed protein
LOC_Os10g26540Os.46536.2.S1_at11/1110+13501910..13504824expressed protein
LOC_Os10g26540Os.46536.1.S1_at8/1110+13501910..13504824expressed protein
LOC_Os10g26540Os.46536.2.S1_x_at4/1110+13501910..13504824expressed protein
LOC_Os10g26550NANA10+13509293..13509829hypothetical protein
LOC_Os10g26560OsAffx.20357.1.S1_at11/1110+13511726..13517239expressed protein
LOC_Os10g26570Os.17997.1.S1_at11/1110+13517550..13521947Phosphofructokinase family protein, expressed
LOC_Os10g26570Os.17997.2.S1_x_at11/1110+13517550..13521947Phosphofructokinase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15059.1.S1_at--35--2051Chr10:13494390..13494414 (25 bp)
ACTTTCTAGGTTTCTCTGAGGTGCT
LOC_Os10g26520
Os.15059.1.S1_at--622--7871Chr10:13494398..13494422 (25 bp)
GGTTTCTCTGAGGTGCTACAATGTT
LOC_Os10g26520
Os.15059.1.S1_at--269--3871Chr10:13494405..13494429 (25 bp)
CTGAGGTGCTACAATGTTTCTTAAT
LOC_Os10g26520
Os.15059.1.S1_at--485--6271Chr10:13494437..13494461 (25 bp)
GATGTGCTGCAGACAGAGGTTGACT
LOC_Os10g26520
Os.15059.1.S1_at--506--5151Chr10:13495033..13495057 (25 bp)
GCAACAGGTCAGGAATGATCTTACT
LOC_Os10g26520
Os.15059.1.S1_at--272--6431Chr10:13495049..13495073 (25 bp)
GATCTTACTTTTGAGTTCATATAAT
LOC_Os10g26520
Os.15059.1.S1_at--50--6731Chr10:13495063..13495087 (25 bp)
GTTCATATAATTCACAAGTTGGTAC
LOC_Os10g26520
Os.15059.1.S1_at--1109--2291Chr10:13495097..13495121 (25 bp)
AAATGGCAGTCTGCTTACTACCCTT
LOC_Os10g26520
Os.15059.1.S1_at--197--9071Chr10:13495108..13495132 (25 bp)
TGCTTACTACCCTTGATGTTGGTCA
LOC_Os10g26520
Os.15059.1.S1_at--489--6271Chr10:13495122..13495146 (25 bp)
GATGTTGGTCACTTCTTCAAAATTA
LOC_Os10g26520
Os.15059.1.S1_at--384--7831Chr10:13495128..13495152 (25 bp)
GGTCACTTCTTCAAAATTATGTTCA
LOC_Os10g26520
Target Sequence 
ACTTTCTAGGTTTCTCTGAGGTGCTACAATGTTTCTTAATTGTGATTGATGTGCTGCAGACAGAGGTTGACTACCTTGGC
CAACTTCACCATGAGAATCTTGTTAAACTCATTGGTTATTGTTCAGATGGTGATAACCGACTTCTGGTGTATGAGTACAT
GCCTAAAGGAAGCTTGGAGAATCATCTATTTAGGCGTGGTGCAGATCCTTTATCCTGGGGAATAAGGCTCAAAGTTGCTA
TTGGGGCTGCTAGGGGTTTATCATTTTTGCACGATGCTGAAAATCAAGTTATATATCGTGATTTCAAGGCATCAAACATT
CTCCTTGACTCGGAGTTCAACGCAAAGCTTTCAGACTTTGGTCTGGCAAAAGCAGGCCCAACTGGGGATAGAACCCATGT
TTCCACACAAGTCATGGGTACCCGAGGTTATGCAGCTCCAGAATATGTTGCAACAGGTCAGGAATGATCTTACTTTTGAG
TTCATATAATTCACAAGTTGGTACAGATTTATTAAATGGCAGTCTGCTTACTACCCTTGATGTTGGTCACTTCTTCAAAA
TTATGTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15059.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis