Browse Element(s) Details


Os.46536.2.S1_x_at

Description gb:NM_196413.1
DB_XREF= gi:37534185
TID=Os.46536.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46536 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBb0044I14.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0044I14.2), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g073806/11expressed protein
LOC_Os10g265404/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g07320NANA3+3702087..3702740transposon protein, putative, Pong sub-class
LOC_Os03g07330OsAffx.3162.1.S1_at11/113+3703740..3705272pentatricopeptide, putative
LOC_Os03g07340Os.12963.1.S1_at11/113+3706875..370803350S ribosomal protein L18, chloroplast precursor, putative, expressed
LOC_Os03g07350OsAffx.12764.2.S1_at11/113+3708333..3712595glycosyl transferase family 2 protein, putative, expressed
LOC_Os03g07350OsAffx.12764.2.S1_x_at11/113+3708333..3712595glycosyl transferase family 2 protein, putative, expressed
LOC_Os03g07350OsAffx.12764.1.S1_at1/113+3708333..3712595glycosyl transferase family 2 protein, putative, expressed
LOC_Os03g07360Os.11987.1.S1_at11/113+3717979..3720806Dof domain, zinc finger family protein, expressed
LOC_Os03g07370Os.10433.1.S1_at11/113+3723554..3725197HNH endonuclease domain-containing protein, putative, expressed
LOC_Os03g07380Os.47357.1.A1_at11/113+3727045..3729679expressed protein
LOC_Os03g07380Os.46536.2.S1_x_at6/113+3727045..3729679expressed protein
LOC_Os03g07390NANA3+3732447..3733847hypothetical protein
LOC_Os03g07400NANA3+3736654..3737232expressed protein
LOC_Os03g07410Os.52495.1.S1_at11/113+3739635..3741424NA
LOC_Os03g07410Os.37090.1.S1_x_at10/113+3739635..3741424NA
LOC_Os03g07410Os.38268.2.S1_s_at1/113+3739635..3741424NA
LOC_Os03g07420Os.6131.1.S1_at11/113+3742938..3746341predicted 3-dehydroquinate synthase family protein, expressed
LOC_Os03g07430Os.9257.1.S1_at11/113+3746799..3750660serine/threonine-protein kinase NAK, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46536.2.S1_x_at--841--5931Chr03:3729620..3729644 (25 bp)
GAGCACTGCTCAGCTTGGCAGCTTG
LOC_Os03g07380
Os.46536.2.S1_x_at--1145--8491Chr03:3729605..3729629 (25 bp)
TGGCAGCTTGCCATCCAGGAGGAAG
LOC_Os03g07380
Os.46536.2.S1_x_at--706--9531Chr03:3729562..3729586 (25 bp)
TCTAGAGAGATCAGTTGCGTTTTGC
LOC_Os03g07380
Os.46536.2.S1_x_at--278--411Chr03:3729553..3729577 (25 bp)
ATCAGTTGCGTTTTGCGAGGCTGCG
LOC_Os03g07380
Os.46536.2.S1_x_at--533--6211Chr03:3729537..3729561 (25 bp)
GAGGCTGCGTGAGAGAGATCATCAT
LOC_Os03g07380
Os.46536.2.S1_x_at--132--9611Chr03:3729519..3729543 (25 bp)
TCATCATTATCCAGCAAACCACCAT
LOC_Os03g07380
Os.46536.2.S1_x_at--816--1851NONE
ACGACTCGCCCACGGAGCAGTGCAG
NONE
Os.46536.2.S1_x_at--50--1131Chr10:13503174..13503198 (25 bp)
AGTGCAGCGACCTGCGGCATGACGA
LOC_Os10g26540
Os.46536.2.S1_x_at--150--4611Chr10:13503180..13503204 (25 bp)
GCGACCTGCGGCATGACGATCGGCA
LOC_Os10g26540
Os.46536.2.S1_x_at--412--7711Chr10:13503243..13503267 (25 bp)
GGGTGCAGGCCAATGCGTCCAGTTA
LOC_Os10g26540
Os.46536.2.S1_x_at--349--611Chr10:13503255..13503279 (25 bp)
ATGCGTCCAGTTATGCGCATGCGGT
LOC_Os10g26540
Target Sequence 
GAGCACTGCTCAGCTTGGCAGCTTGCCATCCAGGAGGAAGAAGATATTCTAGAGATAATCTAGAGAGATCAGTTGCGTTT
TGCGAGGCTGCGTGAGAGAGATCATCATTATCCAGCAAACCACCATGNNGNANANCNNNNNGGNGNANGNNNNGNNNGNG
GNNGGNGGNNNGNNNGGGTGGATGACGGTGCCGGCGTTCGGGGANTGGGACATGAAGAACGGCGCGGTGCCGGACTACTC
CATGGACTTCTCCAAGATCCGGGAGATGCGCAAGCAGAACAAGCGCGAGCTCTCCCGCGCCAGCCTCGGCGGGGACGACG
ACCTCCTCGCCGCGCAGCAGCACAAGGCCGCCGCGCCGCAGCCCGCCCCCAACGCCTCCGCCGCCGCCGACGACCACCGC
CGGCCGCTCCACGCCGCCCACGACGACTCGCCCACGGAGCAGTGCAGCGACCTGCGGCATGACGATCGGCATGGAAAGGG
TGGCCGAATCAGGGGAGGCAATTGCGGGTGGGTGCAGGCCAATGCGTCCAGTTATGCGCATGCGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46536.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis