Browse Element(s) Details


Os.47357.1.A1_at

Description gb:AK063222.1
DB_XREF= gi:32973240
TID=Os.47357.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47357 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-112-E07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-112-E07, full insert sequence.
FL= gb:AK063222.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0738011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g07320NANA3+3702087..3702740transposon protein, putative, Pong sub-class
LOC_Os03g07330OsAffx.3162.1.S1_at11/113+3703740..3705272pentatricopeptide, putative
LOC_Os03g07340Os.12963.1.S1_at11/113+3706875..370803350S ribosomal protein L18, chloroplast precursor, putative, expressed
LOC_Os03g07350OsAffx.12764.2.S1_at11/113+3708333..3712595glycosyl transferase family 2 protein, putative, expressed
LOC_Os03g07350OsAffx.12764.2.S1_x_at11/113+3708333..3712595glycosyl transferase family 2 protein, putative, expressed
LOC_Os03g07350OsAffx.12764.1.S1_at1/113+3708333..3712595glycosyl transferase family 2 protein, putative, expressed
LOC_Os03g07360Os.11987.1.S1_at11/113+3717979..3720806Dof domain, zinc finger family protein, expressed
LOC_Os03g07370Os.10433.1.S1_at11/113+3723554..3725197HNH endonuclease domain-containing protein, putative, expressed
LOC_Os03g07380Os.47357.1.A1_at11/113+3727045..3729679expressed protein
LOC_Os03g07380Os.46536.2.S1_x_at6/113+3727045..3729679expressed protein
LOC_Os03g07390NANA3+3732447..3733847hypothetical protein
LOC_Os03g07400NANA3+3736654..3737232expressed protein
LOC_Os03g07410Os.52495.1.S1_at11/113+3739635..3741424NA
LOC_Os03g07410Os.37090.1.S1_x_at10/113+3739635..3741424NA
LOC_Os03g07410Os.38268.2.S1_s_at1/113+3739635..3741424NA
LOC_Os03g07420Os.6131.1.S1_at11/113+3742938..3746341predicted 3-dehydroquinate synthase family protein, expressed
LOC_Os03g07430Os.9257.1.S1_at11/113+3746799..3750660serine/threonine-protein kinase NAK, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47357.1.A1_at--898--2911Chr03:3727310..3727334 (25 bp)
AAGGAGGACGTTTCTGAGCTACTTC
LOC_Os03g07380
Os.47357.1.A1_at--64--10611Chr03:3727299..3727323 (25 bp)
TTCTGAGCTACTTCCAGTGCTGTAT
LOC_Os03g07380
Os.47357.1.A1_at--928--3631Chr03:3727289..3727313 (25 bp)
CTTCCAGTGCTGTATTAAGGCCTGA
LOC_Os03g07380
Os.47357.1.A1_at--302--2951Chr03:3727273..3727297 (25 bp)
AAGGCCTGAAGAAGGACTGTCAACT
LOC_Os03g07380
Os.47357.1.A1_at--1160--1951Chr03:3727258..3727282 (25 bp)
ACTGTCAACTACTGCTATTGGCTGT
LOC_Os03g07380
Os.47357.1.A1_at--49--4891Chr03:3727245..3727269 (25 bp)
GCTATTGGCTGTACTGTTGTGTCAC
LOC_Os03g07380
Os.47357.1.A1_at--341--7451Chr03:3727227..3727251 (25 bp)
GTGTCACAGTGCAAACTACTCAGCT
LOC_Os03g07380
Os.47357.1.A1_at--5--9811Chr03:3727196..3727220 (25 bp)
TAGATTAGGCTTCTTGGGCTTTGTC
LOC_Os03g07380
Os.47357.1.A1_at--1053--4871Chr03:3727179..3727203 (25 bp)
GCTTTGTCAAGCCTAGCAAGATGTG
LOC_Os03g07380
Os.47357.1.A1_at--565--3111Chr03:3727153..3727177 (25 bp)
AATATATTCGTCGTGATGCTTAATC
LOC_Os03g07380
Os.47357.1.A1_at--182--6131Chr03:3727097..3727121 (25 bp)
GAGTGGCACAGATTGCTTGCGAATT
LOC_Os03g07380
Target Sequence 
AAGGAGGACGTTTCTGAGCTACTTCCAGTGCTGTATTAAGGCCTGAAGAAGGACTGTCAACTACTGCTATTGGCTGTACT
GTTGTGTCACAGTGCAAACTACTCAGCTTATTTTTAGATTAGGCTTCTTGGGCTTTGTCAAGCCTAGCAAGATGTGTAAT
ATATTCGTCGTGATGCTTAATCNTTTGGTCATTCAGAGAACAAAACTATTTATGAGTGGCACAGATTGCTTGCGAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47357.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis