Browse Element(s) Details


Os.37090.1.S1_x_at

Description gb:AK060801.1
DB_XREF= gi:32970819
TID=Os.37090.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.37090 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-033-F05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-033-F05, full insert sequence.
FL= gb:AK060801.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4565010/11MADS-box protein ZMM17, putative, expressed
LOC_Os03g0741010/11
LOC_Os01g235901/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g45610Os.28031.1.S1_at11/116+27613153..27613832expressed protein
LOC_Os06g45620OsAffx.5116.2.S1_at11/116+27617994..27620708hypothetical protein
LOC_Os06g45630Os.56488.1.S1_at11/116+27621773..27625273Leucine Rich Repeat family protein, expressed
LOC_Os06g45630OsAffx.2759.1.S1_x_at1/116+27621773..27625273Leucine Rich Repeat family protein, expressed
LOC_Os06g45640Os.24566.1.S1_at11/116+27626770..27632039CCAAT-box binding factor HAP5 homolog, putative, expressed
LOC_Os06g45650Os.28022.1.S1_s_at11/116+27636557..27640580MADS-box protein ZMM17, putative, expressed
LOC_Os06g45650Os.37090.1.S1_x_at10/116+27636557..27640580MADS-box protein ZMM17, putative, expressed
LOC_Os06g45650Os.52495.1.S1_at9/116+27636557..27640580MADS-box protein ZMM17, putative, expressed
LOC_Os06g45650Os.38268.2.S1_s_at1/116+27636557..27640580MADS-box protein ZMM17, putative, expressed
LOC_Os06g45660Os.22567.1.S1_at11/116+27655876..2765801214 kDa zinc-binding protein, putative, expressed
LOC_Os06g45670Os.13875.1.S1_at11/116+27658072..27660168Glycine cleavage system H protein 1, mitochondrial precursor, putative, expressed
LOC_Os06g45680OsAffx.26553.1.S1_at11/116+27661323..27661827hypothetical protein
LOC_Os06g45680OsAffx.26553.1.S1_x_at11/116+27661323..27661827hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008360biological_processregulation of cell shape
GO:0009908biological_processflower development
GO:0009911biological_processpositive regulation of flower development
GO:0009933biological_processmeristem organization
GO:0010023biological_processproanthocyanidin biosynthesis
GO:0045941biological_processpositive regulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37090.1.S1_x_at--602--333Chr06:27639838..27639862 (25 bp)
ATACTTGCTGCCATGATTTCTATCA
LOC_Os06g45650
Os.37090.1.S1_x_at--314--193Chr06:27639853..27639877 (25 bp)
ATTTCTATCACTCATGCACGCATTG
LOC_Os06g45650
Os.37090.1.S1_x_at--937--5093Chr06:27639868..27639892 (25 bp)
GCACGCATTGCCCTTGATGATTGTA
LOC_Os06g45650
Os.37090.1.S1_x_at--66--2751Chr03:3739954..3739978 (25 bp)
AAGAAAATCCTTGGCGGTTCTGCTT
LOC_Os03g07410
Os.37090.1.S1_x_at--169--5493Chr06:27640242..27640266 (25 bp)
GAACTTGCCTTCTTCATGCATCAGA
LOC_Os06g45650
Os.37090.1.S1_x_at--947--9953Chr06:27640292..27640316 (25 bp)
TACCCTCTCCAAAATTGAGCTGCTC
LOC_Os06g45650
Os.37090.1.S1_x_at--406--8913Chr06:27640307..27640331 (25 bp)
TGAGCTGCTCAGGACTTCGTAGAAA
LOC_Os06g45650
Os.37090.1.S1_x_at--559--7414Chr06:27640350..27640374 (25 bp)
GTGATTTATCCATTCTCTTTTACTG
LOC_Os06g45650
Os.37090.1.S1_x_at--296--133Chr06:27640420..27640444 (25 bp)
ATTAAGGCAGCCTCAGCTTTGTGGT
LOC_Os06g45650
Os.37090.1.S1_x_at--125--1574Chr06:27640434..27640458 (25 bp)
AGCTTTGTGGTTTGCCAAGCCATGT
LOC_Os06g45650
Os.37090.1.S1_x_at--933--773Chr06:27640530..27640554 (25 bp)
ATGTGTCCTGGAATCGGTTTAGAAC
LOC_Os06g45650
Target Sequence 
ATACTTGCTGCCATGATTTCTATCACTCATGCACGCATTGCCCTTGATGATTGTATGCAGTTGGGATATATTGTCATCAA
GCAAGAAAATCCTTGGCGGTTCTGCTTCCTGGAAGCAGTAGGAACAACAAGAGTTACTGAACCAGAAATTGAACTTGCCT
TCTTCATGCATCAGATGAACCATAAAGGGAACAACACTACTACCCTCTCCAAAATTGAGCTGCTCAGGACTTCGTAGAAA
TTTACAGCTTCAGGACATGTGATTTATCCATTCTCTTTTACTGTTTATTCTAAAATGCAAAAAAAAAAAAGAAATTTTGT
TGTAGCTTAGATTAAGGCAGCCTCAGCTTTGTGGTTTGCCAAGCCATGTANTGATATATGAATGTGATACTTTAATTAAN
GTTGAAACGCATGATTATGTATTTGAACTNAATTGACTGAATGTGTCCTGGAATCGGTTTAGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37090.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis