Browse Element(s) Details


Os.24566.1.S1_at

Description gb:AK105079.1
DB_XREF= gi:32990288
TID=Os.24566.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.24566 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-045-H09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-045-H09, full insert sequence.
FL= gb:AK066630.1 gb:AK105079.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4564011/11CCAAT-box binding factor HAP5 homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g45590Os.19152.1.S1_at10/116+27600127..27604339Glyceraldehyde-3-phosphate dehydrogenase, cytosolic, putative, expressed
LOC_Os06g45600OsAffx.15940.1.S1_at11/116+27607479..27608273hypothetical protein
LOC_Os06g45610Os.28031.1.S1_at11/116+27613153..27613832expressed protein
LOC_Os06g45620OsAffx.5116.2.S1_at11/116+27617994..27620708hypothetical protein
LOC_Os06g45630Os.56488.1.S1_at11/116+27621773..27625273Leucine Rich Repeat family protein, expressed
LOC_Os06g45630OsAffx.2759.1.S1_x_at1/116+27621773..27625273Leucine Rich Repeat family protein, expressed
LOC_Os06g45640Os.24566.1.S1_at11/116+27626770..27632039CCAAT-box binding factor HAP5 homolog, putative, expressed
LOC_Os06g45650Os.28022.1.S1_s_at11/116+27636557..27640580MADS-box protein ZMM17, putative, expressed
LOC_Os06g45650Os.37090.1.S1_x_at10/116+27636557..27640580MADS-box protein ZMM17, putative, expressed
LOC_Os06g45650Os.52495.1.S1_at9/116+27636557..27640580MADS-box protein ZMM17, putative, expressed
LOC_Os06g45650Os.38268.2.S1_s_at1/116+27636557..27640580MADS-box protein ZMM17, putative, expressed
LOC_Os06g45660Os.22567.1.S1_at11/116+27655876..2765801214 kDa zinc-binding protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0016602cellular_componentCCAAT-binding factor complex
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24566.1.S1_at--742--4751Chr06:27631504..27631528 (25 bp)
GCTGACTCATATCCGTATGGCTACT
LOC_Os06g45640
Os.24566.1.S1_at--106--4851Chr06:27631523..27631547 (25 bp)
GCTACTATGTGCCACAGCAGCAGGT
LOC_Os06g45640
Os.24566.1.S1_at--364--491Chr06:27631595..27631619 (25 bp)
ATCTGTGGCAGGATCCTCAGGAACA
LOC_Os06g45640
Os.24566.1.S1_at--1159--1431Chr06:27631686..27631710 (25 bp)
AGAAGCTTACCACCTGATTCAGAAT
LOC_Os06g45640
Os.24566.1.S1_at--202--1691Chr06:27631720..27631744 (25 bp)
AGCCAGGTTGTCGTCTATTCTGAAT
LOC_Os06g45640
Os.24566.1.S1_at--298--151Chr06:27631756..27631780 (25 bp)
ATTAGGATTCTCTCATGGTAGTTGC
LOC_Os06g45640
Os.24566.1.S1_at--351--10171Chr06:27631844..27631868 (25 bp)
TATACCGTTTCCTGTCAATCCAAAA
LOC_Os06g45640
Os.24566.1.S1_at--1087--2971Chr06:27631902..27631926 (25 bp)
AATGTGGTTGAACTGCCCATGCCAA
LOC_Os06g45640
Os.24566.1.S1_at--716--4331Chr06:27631918..27631942 (25 bp)
CCATGCCAACGTTTGTAAGCTCTGA
LOC_Os06g45640
Os.24566.1.S1_at--1015--2691Chr06:27631934..27631958 (25 bp)
AAGCTCTGATGTGGGTCATTCTGTA
LOC_Os06g45640
Os.24566.1.S1_at--1070--8771Chr06:27632009..27632033 (25 bp)
TGTTTTACATTCGTGGCATCTGCCA
LOC_Os06g45640
Target Sequence 
GCTGACTCATATCCGTATGGCTACTATGTGCCACAGCAGCAGGTCCCAGGTGCAGGAATAGCGTATGGTGGTCAGCAAGG
TCATCCGGGGTATCTGTGGCAGGATCCTCAGGAACANCAGGAAGAGCCTCCTGCAGAGCAGCAAAGTGATTAAGAAGAGT
AAATGATCCCTGTGAATTGTCAAGAAGCTTACCACCTGATTCAGAATTTTACTTTTAGCCAGGTTGTCGTCTATTCTGAA
TTTATGAATAGGATTAGGATTCTCTCATGGTAGTTGCATTTCTGCTGTAGTGGAAAAGGATTTATGACATGAGAGTATGA
GACTAATGGGTTTCAGTTACTATACCGTTTCCTGTCAATCCAAAAGTTGGCCTTTGCGAGGCCATTGATATTGAACCTAA
TGTGGTTGAACTGCCCATGCCAACGTTTGTAAGCTCTGATGTGGGTCATTCTGTATTTCATGTTTGCATGGTTTCATGGA
ATCTTCTTTGTTTAGACAATGAAAATGTTTTACATTCGTGGCATCTGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24566.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis