Browse Element(s) Details


OsAffx.15940.1.S1_at

Description tigr:9634.m04430
TID=OsAffx.15940.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4560011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g45560NANA6+27582937..27589320retrotransposon protein, putative, unclassified
LOC_Os06g45570Os.55395.1.S1_s_at11/116+27593627..27594557VQ motif family protein, expressed
LOC_Os06g45580NANA6+27597586..27598313Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g45590Os.19152.1.S1_at10/116+27600127..27604339Glyceraldehyde-3-phosphate dehydrogenase, cytosolic, putative, expressed
LOC_Os06g45600OsAffx.15940.1.S1_at11/116+27607479..27608273hypothetical protein
LOC_Os06g45610Os.28031.1.S1_at11/116+27613153..27613832expressed protein
LOC_Os06g45620OsAffx.5116.2.S1_at11/116+27617994..27620708hypothetical protein
LOC_Os06g45630Os.56488.1.S1_at11/116+27621773..27625273Leucine Rich Repeat family protein, expressed
LOC_Os06g45630OsAffx.2759.1.S1_x_at1/116+27621773..27625273Leucine Rich Repeat family protein, expressed
LOC_Os06g45640Os.24566.1.S1_at11/116+27626770..27632039CCAAT-box binding factor HAP5 homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15940.1.S1_at--366--7171Chr06:27607738..27607762 (25 bp)
GTCTCCTGCTGGAACGCGTCAGCGA
LOC_Os06g45600
OsAffx.15940.1.S1_at--968--4691Chr06:27607775..27607799 (25 bp)
GCGGCTCGAGCGCAAGCTGAAGGTG
LOC_Os06g45600
OsAffx.15940.1.S1_at--667--4691Chr06:27607838..27607862 (25 bp)
GCGGCTCACCGCGTCGTTGAAGGAG
LOC_Os06g45600
OsAffx.15940.1.S1_at--617--4611Chr06:27607883..27607907 (25 bp)
GCGAGCGCCGAAGCTTGAGACGATA
LOC_Os06g45600
OsAffx.15940.1.S1_at--255--4511Chr06:27607889..27607913 (25 bp)
GCCGAAGCTTGAGACGATACAGGAG
LOC_Os06g45600
OsAffx.15940.1.S1_at--1072--5711Chr06:27607935..27607959 (25 bp)
GACTCCCACGGCGACAGCAAGAGGA
LOC_Os06g45600
OsAffx.15940.1.S1_at--801--1291Chr06:27608023..27608047 (25 bp)
AGATGCGGGATAGGTACCCGTTACT
LOC_Os06g45600
OsAffx.15940.1.S1_at--1030--10071Chr06:27608033..27608057 (25 bp)
TAGGTACCCGTTACTGGTCGCGGAG
LOC_Os06g45600
OsAffx.15940.1.S1_at--659--6351Chr06:27608178..27608202 (25 bp)
GATGCGCTCATGAAGGTCGTGACCA
LOC_Os06g45600
OsAffx.15940.1.S1_at--870--4471Chr06:27608212..27608236 (25 bp)
GCCGGCGGCTCACCGTGAATTTGAT
LOC_Os06g45600
OsAffx.15940.1.S1_at--293--4831Chr06:27608219..27608243 (25 bp)
GCTCACCGTGAATTTGATGTCTGCG
LOC_Os06g45600
Target Sequence 
GTCTCCTGCTGGAACGCGTCAGCGAGGACGACGCGCGGCGGCTCGAGCGCAAGCTGAAGGTGGAAGAGCTCGCGAGGGGG
AAGTTCGAGCTTCGCCGGCGGCGGCTCACCGCGTCGTTGAAGGAGGCGCTGGTCAAGGCCGGCGGGCGAGCGCCGAAGCT
TGAGACGATACAGGAGGAGGAAGACGACGACGACGACGACTCCCACGGCGACAGCAAGAGGAGGAGGAAGGCGGCGGCGG
CGGCGGAGGAGGAGGAGTGCGGGCGCGGGAGGCGGCAGTACGAGGAGATGCGGGATAGGTACCCGTTACTGGTCGCGGAG
GTGGAGGCGCTCGCCGCCGCCGGCGAGCTCGCGCTGCCGCCGCACGTGCCGGGGCTCCGCCGCCTGGTGGAGCTCGTCGG
CGGGTGCGACGCGCGGCGGCTGGAGGACATGCTGAAGAATGATGCGCTCATGAAGGTCGTGACCAACCTCCAGCGCCGGC
GGCTCACCGTGAATTTGATGTCTGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15940.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis