Browse Element(s) Details


Os.28031.1.S1_at

Description gb:AK107710.1
DB_XREF= gi:32992919
TID=Os.28031.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28031 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-132-D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-132-D09, full insert sequence.
FL= gb:AK103209.1 gb:AK107710.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4561011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g45560NANA6+27582937..27589320retrotransposon protein, putative, unclassified
LOC_Os06g45570Os.55395.1.S1_s_at11/116+27593627..27594557VQ motif family protein, expressed
LOC_Os06g45580NANA6+27597586..27598313Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g45590Os.19152.1.S1_at10/116+27600127..27604339Glyceraldehyde-3-phosphate dehydrogenase, cytosolic, putative, expressed
LOC_Os06g45600OsAffx.15940.1.S1_at11/116+27607479..27608273hypothetical protein
LOC_Os06g45610Os.28031.1.S1_at11/116+27613153..27613832expressed protein
LOC_Os06g45620OsAffx.5116.2.S1_at11/116+27617994..27620708hypothetical protein
LOC_Os06g45630Os.56488.1.S1_at11/116+27621773..27625273Leucine Rich Repeat family protein, expressed
LOC_Os06g45630OsAffx.2759.1.S1_x_at1/116+27621773..27625273Leucine Rich Repeat family protein, expressed
LOC_Os06g45640Os.24566.1.S1_at11/116+27626770..27632039CCAAT-box binding factor HAP5 homolog, putative, expressed
LOC_Os06g45650Os.28022.1.S1_s_at11/116+27636557..27640580MADS-box protein ZMM17, putative, expressed
LOC_Os06g45650Os.37090.1.S1_x_at10/116+27636557..27640580MADS-box protein ZMM17, putative, expressed
LOC_Os06g45650Os.52495.1.S1_at9/116+27636557..27640580MADS-box protein ZMM17, putative, expressed
LOC_Os06g45650Os.38268.2.S1_s_at1/116+27636557..27640580MADS-box protein ZMM17, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28031.1.S1_at--878--2471Chr06:27613406..27613430 (25 bp)
AACTTCGACCGGAGTGGCCTCGGCG
LOC_Os06g45610
Os.28031.1.S1_at--358--1371Chr06:27613541..27613565 (25 bp)
AGACCGATGCTAGCTGAGGCACGCA
LOC_Os06g45610
Os.28031.1.S1_at--352--3451Chr06:27613584..27613608 (25 bp)
CAGTGCTGCGCGTAGCTAAGCTAGC
LOC_Os06g45610
Os.28031.1.S1_at--1135--1551Chr06:27613610..27613634 (25 bp)
AGCTTAGCTCTAGCCATTAGAGGTA
LOC_Os06g45610
Os.28031.1.S1_at--968--6151Chr06:27613629..27613653 (25 bp)
GAGGTAGATGCACTCTTGTTCTTCA
LOC_Os06g45610
Os.28031.1.S1_at--512--2011Chr06:27613640..27613664 (25 bp)
ACTCTTGTTCTTCATCCTGCAGTGT
LOC_Os06g45610
Os.28031.1.S1_at--1068--851Chr06:27613724..27613748 (25 bp)
ATGGCTCTCTCCATTGGCCGAGATG
LOC_Os06g45610
Os.28031.1.S1_at--572--711Chr06:27613746..27613770 (25 bp)
ATGATGGTTTCGATCTCTCGTGCTG
LOC_Os06g45610
Os.28031.1.S1_at--1025--9511Chr06:27613759..27613783 (25 bp)
TCTCTCGTGCTGATTTCTTGGAAAT
LOC_Os06g45610
Os.28031.1.S1_at--279--5591Chr06:27613779..27613803 (25 bp)
GAAATCCATGCACATTATTCCTGAT
LOC_Os06g45610
Os.28031.1.S1_at--792--9811Chr06:27613803..27613827 (25 bp)
TATAAATCGTCCCATTAATTCCTTT
LOC_Os06g45610
Target Sequence 
AACTTCGACCGGAGTGGCCTCGGCGACGACGGCGGCGACGTCTCCGCGCAGCTCTACCACCGCTACACCTTCGCCTCCCG
CTTCGTTCTCTCCTCTTCGTCCACGGCCGCTCGCCGGCAGCCGCAATAGGGGCCGAGACCGATGCTAGCTGAGGCACGCA
TGGCCGGTCTGCGCGTGCCAGTGCTGCGCGTAGCTAAGCTAGCTAGCTTAGCTCTAGCCATTAGAGGTAGATGCACTCTT
GTTCTTCATCCTGCAGTGTTGTTAATTAATTAGTGTGTTCATATGAGGAGGGAGTGGTGGTTGTAAGGGATTTCTTCCAT
GGCTCTCTCCATTGGCCGAGATGATGGTTTCGATCTCTCGTGCTGATTTCTTGGAAATCCATGCACATTATTCCTGATAT
AAATCGTCCCATTAATTCCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28031.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis