Browse Element(s) Details


Os.52495.1.S1_at

Description gb:AK067518.1
DB_XREF= gi:32977536
TID=Os.52495.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52495 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013110N09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013110N09, full insert sequence.
FL= gb:AK067518.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0741011/11
LOC_Os06g456509/11MADS-box protein ZMM17, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g07360Os.11987.1.S1_at11/113+3717979..3720806Dof domain, zinc finger family protein, expressed
LOC_Os03g07370Os.10433.1.S1_at11/113+3723554..3725197HNH endonuclease domain-containing protein, putative, expressed
LOC_Os03g07380Os.47357.1.A1_at11/113+3727045..3729679expressed protein
LOC_Os03g07380Os.46536.2.S1_x_at6/113+3727045..3729679expressed protein
LOC_Os03g07390NANA3+3732447..3733847hypothetical protein
LOC_Os03g07400NANA3+3736654..3737232expressed protein
LOC_Os03g07410Os.52495.1.S1_at11/113+3739635..3741424NA
LOC_Os03g07410Os.37090.1.S1_x_at10/113+3739635..3741424NA
LOC_Os03g07410Os.38268.2.S1_s_at1/113+3739635..3741424NA
LOC_Os03g07420Os.6131.1.S1_at11/113+3742938..3746341predicted 3-dehydroquinate synthase family protein, expressed
LOC_Os03g07430Os.9257.1.S1_at11/113+3746799..3750660serine/threonine-protein kinase NAK, putative, expressed
LOC_Os03g07440NANA3+3755892..3756656Vip1 protein, putative, expressed
LOC_Os03g07450OsAffx.12765.1.S1_x_at11/113+3763394..3766044DNA-binding protein, putative, expressed
LOC_Os03g07450OsAffx.18415.1.S1_x_at4/113+3763394..3766044DNA-binding protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008360biological_processregulation of cell shape
GO:0009908biological_processflower development
GO:0009911biological_processpositive regulation of flower development
GO:0009933biological_processmeristem organization
GO:0010023biological_processproanthocyanidin biosynthesis
GO:0045941biological_processpositive regulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52495.1.S1_at--476--10231Chr03:3740212..3740236 (25 bp)
TATTGGTGAGTTCACCCTCTATCTC
LOC_Os03g07410
Os.52495.1.S1_at--982--3673Chr06:27639924..27639948 (25 bp)
CTATCTCTCTCTCAAACCATTATTT
LOC_Os06g45650
Os.52495.1.S1_at--1053--173Chr06:27639945..27639969 (25 bp)
ATTTATCTTCATTCACTATTCACTT
LOC_Os06g45650
Os.52495.1.S1_at--857--213Chr06:27639959..27639983 (25 bp)
ACTATTCACTTACAATTTCCCTCGT
LOC_Os06g45650
Os.52495.1.S1_at--1010--192Chr06:24215618..24215642 (25 bp)
ATTTCCCTCGTATTAGTGATATGTA
NONE
Os.52495.1.S1_at--213--2473Chr06:27640034..27640058 (25 bp)
AACAGAGTTAGCTCCTTTGGAACGA
LOC_Os06g45650
Os.52495.1.S1_at--1121--2253Chr06:27640064..27640088 (25 bp)
AAATGCTACTTTGATAACTTGACTT
LOC_Os06g45650
Os.52495.1.S1_at--487--6473Chr06:27640076..27640100 (25 bp)
GATAACTTGACTTCTCAACACCACT
LOC_Os06g45650
Os.52495.1.S1_at--449--1713Chr06:27640095..27640119 (25 bp)
ACCACTCTTATCTGCACACAATTTT
LOC_Os06g45650
Os.52495.1.S1_at--302--5853Chr06:27640126..27640150 (25 bp)
GACCAGTTTGAACTTTCATCTCTTT
LOC_Os06g45650
Os.52495.1.S1_at--220--10553Chr06:27640140..27640164 (25 bp)
TTCATCTCTTTACAGTCATCAAGCA
LOC_Os06g45650
Target Sequence 
TATTGGTGAGTTCACCCTCTATCTCTCTCTCAAACCATTATTTATCTTCATTCACTATTCACTTACAATTTCCCTCGTAT
TAGTGATATGTATTAGTGAGTTTATGAAAAAAAGATCAGATATTTAAAAACAGAGTTAGCTCCTTTGGAACGAAGACAAA
ATGCTACTTTGATAACTTGACTTCTCAACACCACTCTTATCTGCACACAATTTTTTTAATGACCAGTTTGAACTTTCATC
TCTTTACAGTCATCAAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52495.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis