Browse Element(s) Details


Os.10433.1.S1_at

Description gb:AK068278.1
DB_XREF= gi:32978296
TID=Os.10433.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10433 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013136C11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013136C11, full insert sequence.
FL= gb:AK068278.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0737011/11HNH endonuclease domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g07310Os.52078.1.S1_at11/113+3692603..3700216Axi 1 protein, putative, expressed
LOC_Os03g07310Os.52078.2.S1_at11/113+3692603..3700216Axi 1 protein, putative, expressed
LOC_Os03g07320NANA3+3702087..3702740transposon protein, putative, Pong sub-class
LOC_Os03g07330OsAffx.3162.1.S1_at11/113+3703740..3705272pentatricopeptide, putative
LOC_Os03g07340Os.12963.1.S1_at11/113+3706875..370803350S ribosomal protein L18, chloroplast precursor, putative, expressed
LOC_Os03g07350OsAffx.12764.2.S1_at11/113+3708333..3712595glycosyl transferase family 2 protein, putative, expressed
LOC_Os03g07350OsAffx.12764.2.S1_x_at11/113+3708333..3712595glycosyl transferase family 2 protein, putative, expressed
LOC_Os03g07350OsAffx.12764.1.S1_at1/113+3708333..3712595glycosyl transferase family 2 protein, putative, expressed
LOC_Os03g07360Os.11987.1.S1_at11/113+3717979..3720806Dof domain, zinc finger family protein, expressed
LOC_Os03g07370Os.10433.1.S1_at11/113+3723554..3725197HNH endonuclease domain-containing protein, putative, expressed
LOC_Os03g07380Os.47357.1.A1_at11/113+3727045..3729679expressed protein
LOC_Os03g07380Os.46536.2.S1_x_at6/113+3727045..3729679expressed protein
LOC_Os03g07390NANA3+3732447..3733847hypothetical protein
LOC_Os03g07400NANA3+3736654..3737232expressed protein
LOC_Os03g07410Os.52495.1.S1_at11/113+3739635..3741424NA
LOC_Os03g07410Os.37090.1.S1_x_at10/113+3739635..3741424NA
LOC_Os03g07410Os.38268.2.S1_s_at1/113+3739635..3741424NA
LOC_Os03g07420Os.6131.1.S1_at11/113+3742938..3746341predicted 3-dehydroquinate synthase family protein, expressed
LOC_Os03g07430Os.9257.1.S1_at11/113+3746799..3750660serine/threonine-protein kinase NAK, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0004519molecular_functionendonuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10433.1.S1_at--265--5451Chr03:3724170..3724580 (25 bp)
GAACTGCCAGGTTTTGCAGGCTACT
LOC_Os03g07370
Os.10433.1.S1_at--1082--4971Chr03:3724155..3724178 (24 bp)
GCAGGCTACTGTAAACCGGTCTAAA
LOC_Os03g07370
Os.10433.1.S1_at--285--5911Chr03:3724103..3724127 (25 bp)
GAGCTCATACAGAAGAGTGCCTATT
LOC_Os03g07370
Os.10433.1.S1_at--918--1131Chr03:3724090..3724112 (23 bp)
AGTGCCTATTGTAGGGTCTCAGGAC
LOC_Os03g07370
Os.10433.1.S1_at--239--8111Chr03:3723965..3723989 (25 bp)
GGACGTGATATGGATCTTCTTGAAC
LOC_Os03g07370
Os.10433.1.S1_at--234--9591Chr03:3723948..3723972 (25 bp)
TCTTGAACTCTCTGCATATGGGAAT
LOC_Os03g07370
Os.10433.1.S1_at--2--7291Chr03:3723788..3723812 (25 bp)
GTGCCAAATATGTATACTCCCAGCT
LOC_Os03g07370
Os.10433.1.S1_at--197--9911Chr03:3723774..3723798 (25 bp)
TACTCCCAGCTTTATGGGCATTCAT
LOC_Os03g07370
Os.10433.1.S1_at--874--10451Chr03:3723699..3723723 (25 bp)
TTAGCATACTTAACGGATCCTGATT
LOC_Os03g07370
Os.10433.1.S1_at--323--291Chr03:3723644..3723668 (25 bp)
ATAGTTCCAAGTGCGGTCAGTGTAA
LOC_Os03g07370
Os.10433.1.S1_at--420--3511Chr03:3723618..3723642 (25 bp)
CATGTGTCGACGCATTTGTTTTAAA
LOC_Os03g07370
Target Sequence 
GAACTGCCAGGTTTTGCAGGCTACTGTAAACCGGTCTAAAGGGAACAAAACAGAGTTATCCAAATCTGAGCTCATACAGA
AGAGTGCCTATTGTAGGGTCTCAGGACGTGATATGGATCTTCTTGAACTCTCTGCATATGGGAATGTTAGGCGAGGGCCA
GATTCAGGTGGTTGCAGAATCCAATGAAGACGATGGGTACNGTCTGAAGAGTGATGATAATCNAGTTTCAAAAGGCTGCC
NTGCCTACCTCAAATCTGATAGGAAAAATCCCAGCTGATGTTTGTGCCAAATATGTATACTCCCAGCTTTATGGGCATTC
ATCATCCNNTTTCTAAGGATTGACCATCAGGAATGTTATGAATTTTGTCATCTTAGCATACTTAACGGATCCTGATTTAA
GGCATATTTTATTTTGTATTACATACCATAGTTCCAAGTGCGGTCAGTGTAAACATGTGTCGACGCATTTGTTTTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10433.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis