Browse Element(s) Details


Os.11987.1.S1_at

Description gb:AK099490.1
DB_XREF= gi:32984699
TID=Os.11987.1
CNT=41
FEA=FLmRNA
TIER=FL+Stack
STK=19
UG=Os.11987 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 20575 putative H-protein promoter binding factor-2a mRNA, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013026L11, full insert sequence.
FL= gb:AK060900.1 gb:AK099490.1 gb:AY224429.1 gb:AK104523.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0736011/11Dof domain, zinc finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g07310Os.52078.1.S1_at11/113+3692603..3700216Axi 1 protein, putative, expressed
LOC_Os03g07310Os.52078.2.S1_at11/113+3692603..3700216Axi 1 protein, putative, expressed
LOC_Os03g07300Os.12622.1.S1_at10/113+3693033..3696507Ribulose-phosphate 3-epimerase, chloroplast precursor, putative, expressed
LOC_Os03g07320NANA3+3702087..3702740transposon protein, putative, Pong sub-class
LOC_Os03g07330OsAffx.3162.1.S1_at11/113+3703740..3705272pentatricopeptide, putative
LOC_Os03g07340Os.12963.1.S1_at11/113+3706875..370803350S ribosomal protein L18, chloroplast precursor, putative, expressed
LOC_Os03g07350OsAffx.12764.2.S1_at11/113+3708333..3712595glycosyl transferase family 2 protein, putative, expressed
LOC_Os03g07350OsAffx.12764.2.S1_x_at11/113+3708333..3712595glycosyl transferase family 2 protein, putative, expressed
LOC_Os03g07350OsAffx.12764.1.S1_at1/113+3708333..3712595glycosyl transferase family 2 protein, putative, expressed
LOC_Os03g07360Os.11987.1.S1_at11/113+3717979..3720806Dof domain, zinc finger family protein, expressed
LOC_Os03g07370Os.10433.1.S1_at11/113+3723554..3725197HNH endonuclease domain-containing protein, putative, expressed
LOC_Os03g07380Os.47357.1.A1_at11/113+3727045..3729679expressed protein
LOC_Os03g07380Os.46536.2.S1_x_at6/113+3727045..3729679expressed protein
LOC_Os03g07390NANA3+3732447..3733847hypothetical protein
LOC_Os03g07400NANA3+3736654..3737232expressed protein
LOC_Os03g07410Os.52495.1.S1_at11/113+3739635..3741424NA
LOC_Os03g07410Os.37090.1.S1_x_at10/113+3739635..3741424NA
LOC_Os03g07410Os.38268.2.S1_s_at1/113+3739635..3741424NA
LOC_Os03g07420Os.6131.1.S1_at11/113+3742938..3746341predicted 3-dehydroquinate synthase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11987.1.S1_at--46--8891Chr03:3720154..3720178 (25 bp)
TGAGGAACTGGATAGCAAGGGTAAT
LOC_Os03g07360
Os.11987.1.S1_at--721--5771Chr03:3720221..3720245 (25 bp)
GACGAGGTGGCCAGGAGCTCTATCT
LOC_Os03g07360
Os.11987.1.S1_at--219--4431Chr03:3720230..3720254 (25 bp)
GCCAGGAGCTCTATCTGGTCGCTTA
LOC_Os03g07360
Os.11987.1.S1_at--108--9471Chr03:3720243..3720267 (25 bp)
TCTGGTCGCTTATTGGGATCAAGGG
LOC_Os03g07360
Os.11987.1.S1_at--956--4111Chr03:3720249..3720273 (25 bp)
CGCTTATTGGGATCAAGGGTGACAA
LOC_Os03g07360
Os.11987.1.S1_at--988--371Chr03:3720343..3720367 (25 bp)
ATCAACTCACACAGCGATCAGCAGC
LOC_Os03g07360
Os.11987.1.S1_at--1002--1631Chr03:3720355..3720379 (25 bp)
AGCGATCAGCAGCTTGCCATTCATG
LOC_Os03g07360
Os.11987.1.S1_at--815--9651Chr03:3720360..3720384 (25 bp)
TCAGCAGCTTGCCATTCATGCAGGG
LOC_Os03g07360
Os.11987.1.S1_at--1014--4311Chr03:3720414..3720438 (25 bp)
CCTTCCAAGAGGGATCTTGACTTGA
LOC_Os03g07360
Os.11987.1.S1_at--1117--3611Chr03:3720429..3720453 (25 bp)
CTTGACTTGAACAACGCCTTGGAAA
LOC_Os03g07360
Os.11987.1.S1_at--200--5951Chr03:3720642..3720666 (25 bp)
GAGCAAGTTCCCCTTATAATATGTA
LOC_Os03g07360
Target Sequence 
TGAGGAACTGGATAGCAAGGGTAATGGCAAGGTGTGGGTGCCGAAGACGGTTCGGATCGACGATGTCGACGAGGTGGCCA
GGAGCTCTATCTGGTCGCTTATTGGGATCAAGGGTGACAAGGTGGGAGCAGATCATGGCAGAGGATGCAAGCTTGCAAAG
GTTTTTGAGTCAAAGGATGAGGCAAAGNCATCAACTCACACAGCGATCAGCAGCTTGCCATTCATGCAGGGGAACCCGGC
TGCCCTAACACGCTCGGTGACCTTCCAAGAGGGATCTTGACTTGAACAACGCCTTGGAAATTTTTATGCTGCCTTCTGCT
GCTATAAAGACATAGCGTGATACAGCTGAAATTTTGTACATTAGAGGATTGTAAAGTAGGTATGGGAGATGGAGTGTCAG
GGTGTATAACTTAACATAGCTACAAGCAAGCCCAGTAGCTGTATTAGATAACTTGTACATAGCTATGTGGGTTTGAGAAA
GATAGGGAGAGCAAGTTCCCCTTATAATATGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11987.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis