Browse Element(s) Details


Os.12622.1.S1_at

Description gb:AK099215.1
DB_XREF= gi:32984424
TID=Os.12622.1
CNT=57
FEA=FLmRNA
TIER=FL+Stack
STK=21
UG=Os.12622 (NCBI UniGene Cluster)
UG_TITLE=Ribulose-5-phosphate-3-epimerase (RPE) mRNA, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013084F18, full insert sequence.
FL= gb:AK061772.1 gb:AK099215.1 gb:AK066306.1 gb:AF047444.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0730010/11Ribulose-phosphate 3-epimerase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g07220OsAffx.25003.1.S1_at11/113+3669116..3673548pentatricopeptide, putative
LOC_Os03g07234Os.13504.1.S1_s_at11/113+3673853..3680697pentatricopeptide, putative
LOC_Os03g07234OsAffx.25004.1.S1_at11/113+3673853..3680697pentatricopeptide, putative
LOC_Os03g07234OsAffx.12761.1.S1_at11/113+3673853..3680697pentatricopeptide, putative
LOC_Os03g07234Os.13561.1.S1_s_at11/113+3673853..3680697pentatricopeptide, putative
LOC_Os03g07250Os.5752.1.S1_s_at11/113+3681052..3683171Cytochrome P450 family protein, expressed
LOC_Os03g07250OsAffx.12762.1.S1_x_at11/113+3681052..3683171Cytochrome P450 family protein, expressed
LOC_Os03g07260OsAffx.12763.1.S1_at11/113+3684278..3685888TPR Domain containing protein
LOC_Os03g07270Os.48500.1.A1_s_at11/113+3686298..3687608expressed protein
LOC_Os03g07270Os.38457.1.S1_s_at11/113+3686298..3687608expressed protein
LOC_Os03g07270OsAffx.3864.1.S1_x_at1/113+3686298..3687608expressed protein
LOC_Os03g07290Os.14697.1.S1_at11/113+3690248..3692364ribosomal protein L32 containing protein, expressed
LOC_Os03g07310Os.52078.1.S1_at11/113+3692603..3700216Axi 1 protein, putative, expressed
LOC_Os03g07310Os.52078.2.S1_at11/113+3692603..3700216Axi 1 protein, putative, expressed
LOC_Os03g07300Os.12622.1.S1_at10/113+3693033..3696507Ribulose-phosphate 3-epimerase, chloroplast precursor, putative, expressed
LOC_Os03g07320NANA3+3702087..3702740transposon protein, putative, Pong sub-class
LOC_Os03g07330OsAffx.3162.1.S1_at11/113+3703740..3705272pentatricopeptide, putative
LOC_Os03g07340Os.12963.1.S1_at11/113+3706875..370803350S ribosomal protein L18, chloroplast precursor, putative, expressed
LOC_Os03g07350OsAffx.12764.2.S1_at11/113+3708333..3712595glycosyl transferase family 2 protein, putative, expressed
LOC_Os03g07350OsAffx.12764.2.S1_x_at11/113+3708333..3712595glycosyl transferase family 2 protein, putative, expressed
LOC_Os03g07350OsAffx.12764.1.S1_at1/113+3708333..3712595glycosyl transferase family 2 protein, putative, expressed
LOC_Os03g07360Os.11987.1.S1_at11/113+3717979..3720806Dof domain, zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0004750molecular_functionribulose-phosphate 3-epimerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12622.1.S1_at--525--1211Chr03:3694908..3694932 (25 bp)
AGTTGTTTTGAATCCTGCAACCCCT
LOC_Os03g07300
Os.12622.1.S1_at--991--2611Chr03:3694926..3694950 (25 bp)
AACCCCTCTCACTGCGATAGATTAT
LOC_Os03g07300
Os.12622.1.S1_at--721--151Chr03:3695504..3695528 (25 bp)
ATTATGTCGGTGAATCCTGGGTTTG
LOC_Os03g07300
Os.12622.1.S1_at--793--7551Chr03:3695857..3695881 (25 bp)
GGGCCAACGCCATTGTTGCTGGTTC
LOC_Os03g07300
Os.12622.1.S1_at--149--7591Chr03:3695893..3695913 (21 bp)
GGGCTCCAGACTATGCAGAAGCTAT
LOC_Os03g07300
Os.12622.1.S1_at--1005--8331Chr03:3696073..3696097 (25 bp)
GGCTGTACCAGCATGAGGATCCTAA
LOC_Os03g07300
Os.12622.1.S1_at--393--1731Chr03:3696128..3696152 (25 bp)
ACCAGTACCGCGGTTTGTACAGATA
LOC_Os03g07300
Os.12622.1.S1_at--352--8531NONE
TGGAGGGCGACCGTTTTTTCTCACT
NONE
Os.12622.1.S1_at--55--10371Chr03:3696215..3696239 (25 bp)
TTTTTCTCACTGTCCGCGAAGATAT
LOC_Os03g07300
Os.12622.1.S1_at--540--7451Chr03:3696254..3696278 (25 bp)
GTGTCATGTGATACTACCGTGCTCA
LOC_Os03g07300
Os.12622.1.S1_at--933--1771Chr03:3696269..3696293 (25 bp)
ACCGTGCTCACGAAATTGTTCATAA
LOC_Os03g07300
Target Sequence 
AGTTGTTTTGAATCCTGCAACCCCTCTCACTGCGATAGATTATGTACTTGATGTTGTTGATCTAGTATTGATTATGTCGG
TGAATCCTGGGTTTGGTGGGCAGAGCTTTATTGAAAGCCAAGTGAAGAAGATTGCAGAGTTGAGAAGATTATGTGCCAGA
GAAGGGAGTAAACCCTTGGATTGAGGTTGATGGTGGAGTTGGTCCCAAAAACGCCTACAAGGTCATTGAAGCTGGGGCCA
ACGCCATTGTTGCTGGTTCAGCCGTTTTCGGGGCTCCAGACTATGCAGAAGCTATCAAGGGAATCAAGACCAGCCAAAAA
ACCTGTGGCTGTACCAGCATGAGGATCCTAAAGTAGTATGCTGTGTACGTTGTTTTTGGTTTACCAGTACCGCGGTTTGT
ACAGATATGTGCCAAGCTGTACGTTATATTGGAGAAATTGAAGGAAGAAGAAAACGTGGAGGGCGACCGTTTTTTCTCAC
TGTCCGCGAAGATATACTACATATTCTCAGTGTCATGTGATACTACCGTGCTCACGAAATTGTTCATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12622.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis