Browse Element(s) Details


Os.5752.1.S1_s_at

Description gb:AU172759
DB_XREF= gi:12622546
DB_XREF=AU172759
CLONE=E20951
TID=Os.5752.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.5752 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_172773.1 (A.thaliana) putative cytochrome P450 monooxygenase (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0725011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g07170Os.53485.1.S1_at11/113+3653396..3657425lactose permease, putative, expressed
LOC_Os03g07180Os.6330.1.S1_at11/113+3657403..3659080Late embryogenesis abundant protein, expressed
LOC_Os03g07190Os.28404.1.A1_at11/113+3660211..3662388expressed protein
LOC_Os03g07200Os.20934.1.A1_at1/113+3662283..3664420expressed protein
LOC_Os03g07220OsAffx.25003.1.S1_at11/113+3669116..3673548pentatricopeptide, putative
LOC_Os03g07234Os.13504.1.S1_s_at11/113+3673853..3680697pentatricopeptide, putative
LOC_Os03g07234OsAffx.25004.1.S1_at11/113+3673853..3680697pentatricopeptide, putative
LOC_Os03g07234OsAffx.12761.1.S1_at11/113+3673853..3680697pentatricopeptide, putative
LOC_Os03g07234Os.13561.1.S1_s_at11/113+3673853..3680697pentatricopeptide, putative
LOC_Os03g07250Os.5752.1.S1_s_at11/113+3681052..3683171Cytochrome P450 family protein, expressed
LOC_Os03g07250OsAffx.12762.1.S1_x_at11/113+3681052..3683171Cytochrome P450 family protein, expressed
LOC_Os03g07260OsAffx.12763.1.S1_at11/113+3684278..3685888TPR Domain containing protein
LOC_Os03g07270Os.48500.1.A1_s_at11/113+3686298..3687608expressed protein
LOC_Os03g07270Os.38457.1.S1_s_at11/113+3686298..3687608expressed protein
LOC_Os03g07270OsAffx.3864.1.S1_x_at1/113+3686298..3687608expressed protein
LOC_Os03g07290Os.14697.1.S1_at11/113+3690248..3692364ribosomal protein L32 containing protein, expressed
LOC_Os03g07310Os.52078.1.S1_at11/113+3692603..3700216Axi 1 protein, putative, expressed
LOC_Os03g07310Os.52078.2.S1_at11/113+3692603..3700216Axi 1 protein, putative, expressed
LOC_Os03g07300Os.12622.1.S1_at10/113+3693033..3696507Ribulose-phosphate 3-epimerase, chloroplast precursor, putative, expressed
LOC_Os03g07320NANA3+3702087..3702740transposon protein, putative, Pong sub-class
LOC_Os03g07330OsAffx.3162.1.S1_at11/113+3703740..3705272pentatricopeptide, putative
LOC_Os03g07340Os.12963.1.S1_at11/113+3706875..370803350S ribosomal protein L18, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5752.1.S1_s_at--890--8491Chr03:3681300..3681324 (25 bp)
TCGTCGAGGACCACCCCGTCAAGTA
LOC_Os03g07250
Os.5752.1.S1_s_at--761--7991Chr03:3681273..3681297 (25 bp)
GGATGATGACCATCCTCTCCATGGC
LOC_Os03g07250
Os.5752.1.S1_s_at--986--9491Chr03:3681258..3681282 (25 bp)
TCTCCATGGCTCACGGCCTCAAGGT
LOC_Os03g07250
Os.5752.1.S1_s_at--763--4531Chr03:3681175..3681199 (25 bp)
GCCCGTATCGCTTACCGGAGTAGTA
LOC_Os03g07250
Os.5752.1.S1_s_at--691--9951Chr03:3681163..3681187 (25 bp)
TACCGGAGTAGTAAATAAGCCTATG
LOC_Os03g07250
Os.5752.1.S1_s_at--550--2251Chr03:3681151..3681175 (25 bp)
AAATAAGCCTATGTAATCTGGTTTG
LOC_Os03g07250
Os.5752.1.S1_s_at--792--4451Chr03:3681145..3681169 (25 bp)
GCCTATGTAATCTGGTTTGAATTTG
LOC_Os03g07250
Os.5752.1.S1_s_at--847--5211Chr03:3681127..3681151 (25 bp)
GAATTTGAAATTTGAATGTACCATG
LOC_Os03g07250
Os.5752.1.S1_s_at--437--2991Chr03:3681113..3681137 (25 bp)
AATGTACCATGTTTGATTCTAGGAT
LOC_Os03g07250
Os.5752.1.S1_s_at--493--7791Chr03:3681083..3681107 (25 bp)
GGTCCTAGACCCTGCTTGAAACGGT
LOC_Os03g07250
Os.5752.1.S1_s_at--254--7251Chr03:3681082..3681106 (25 bp)
GTCCTAGACCCTGCTTGAAACGGTG
LOC_Os03g07250
Target Sequence 
TCGTCGAGGACCACCCCGTCAAGTACNGGATGATGACCATCCTCTCCATGGCTCACGGCCTCAAGGTCCGCGTCTCCACC
TCCGTCTGACCCCCGCCGCCGCTCGCCGGCANCCGCGCCGCCGCCGCCCGTATCGCTTACCGGAGTAGTAAATAAGCCTA
TGTAATCTGGTTTGAATTTGAAATTTGAATGTACCATGTTTGATTCTAGGATTNGTNGGTCCTAGACCCTGCTTGAAACG
GTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5752.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis