Browse Element(s) Details


Os.13561.1.S1_s_at

Description gb:CA765372
DB_XREF= gi:27547404
DB_XREF=AF53-Rpf_07_D24_T7_090.ab1
CLONE=C0002400
TID=Os.13561.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.13561 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_200952.1 (A.thaliana) thioredoxin-like 3 (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0723411/11pentatricopeptide, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g07160Os.27429.1.S1_at11/113+3643751..3649046Kelch motif family protein, expressed
LOC_Os03g07170Os.53485.1.S1_at11/113+3653396..3657425lactose permease, putative, expressed
LOC_Os03g07180Os.6330.1.S1_at11/113+3657403..3659080Late embryogenesis abundant protein, expressed
LOC_Os03g07190Os.28404.1.A1_at11/113+3660211..3662388expressed protein
LOC_Os03g07200Os.20934.1.A1_at1/113+3662283..3664420expressed protein
LOC_Os03g07220OsAffx.25003.1.S1_at11/113+3669116..3673548pentatricopeptide, putative
LOC_Os03g07234Os.13504.1.S1_s_at11/113+3673853..3680697pentatricopeptide, putative
LOC_Os03g07234OsAffx.25004.1.S1_at11/113+3673853..3680697pentatricopeptide, putative
LOC_Os03g07234OsAffx.12761.1.S1_at11/113+3673853..3680697pentatricopeptide, putative
LOC_Os03g07234Os.13561.1.S1_s_at11/113+3673853..3680697pentatricopeptide, putative
LOC_Os03g07250Os.5752.1.S1_s_at11/113+3681052..3683171Cytochrome P450 family protein, expressed
LOC_Os03g07250OsAffx.12762.1.S1_x_at11/113+3681052..3683171Cytochrome P450 family protein, expressed
LOC_Os03g07260OsAffx.12763.1.S1_at11/113+3684278..3685888TPR Domain containing protein
LOC_Os03g07270Os.48500.1.A1_s_at11/113+3686298..3687608expressed protein
LOC_Os03g07270Os.38457.1.S1_s_at11/113+3686298..3687608expressed protein
LOC_Os03g07270OsAffx.3864.1.S1_x_at1/113+3686298..3687608expressed protein
LOC_Os03g07290Os.14697.1.S1_at11/113+3690248..3692364ribosomal protein L32 containing protein, expressed
LOC_Os03g07310Os.52078.1.S1_at11/113+3692603..3700216Axi 1 protein, putative, expressed
LOC_Os03g07310Os.52078.2.S1_at11/113+3692603..3700216Axi 1 protein, putative, expressed
LOC_Os03g07300Os.12622.1.S1_at10/113+3693033..3696507Ribulose-phosphate 3-epimerase, chloroplast precursor, putative, expressed
LOC_Os03g07320NANA3+3702087..3702740transposon protein, putative, Pong sub-class
LOC_Os03g07330OsAffx.3162.1.S1_at11/113+3703740..3705272pentatricopeptide, putative

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13561.1.S1_s_at--1006--731Chr03:3674146..3674170 (25 bp)
ATGTTCATGTATTGCCAATGTTCCG
LOC_Os03g07234
Os.13561.1.S1_s_at--364--731Chr03:3674140..3674164 (25 bp)
ATGTATTGCCAATGTTCCGCTTTTA
LOC_Os03g07234
Os.13561.1.S1_s_at--436--6871Chr03:3674138..3674162 (25 bp)
GTATTGCCAATGTTCCGCTTTTACA
LOC_Os03g07234
Os.13561.1.S1_s_at--1082--71Chr03:3674136..3674160 (25 bp)
ATTGCCAATGTTCCGCTTTTACAGA
LOC_Os03g07234
Os.13561.1.S1_s_at--344--5051Chr03:3674108..3674132 (25 bp)
GCAGAAGGCCGTATCTGTAGCTTCA
LOC_Os03g07234
Os.13561.1.S1_s_at--526--3171Chr03:3673998..3674101 (25 bp)
CAATTTCAACTATTTATAAGATCAA
LOC_Os03g07234
Os.13561.1.S1_s_at--187--331Chr03:3673926..3673950 (25 bp)
ATAAGGGCTTGGAGAAATCAGAACT
LOC_Os03g07234
Os.13561.1.S1_s_at--1092--8051Chr03:3673916..3673940 (25 bp)
GGAGAAATCAGAACTTCAGAACTCT
LOC_Os03g07234
Os.13561.1.S1_s_at--559--10531Chr03:3673902..3673926 (25 bp)
TTCAGAACTCTGATATTGACGCTTC
LOC_Os03g07234
Os.13561.1.S1_s_at--631--5471Chr03:3673898..3673922 (25 bp)
GAACTCTGATATTGACGCTTCATAT
LOC_Os03g07234
Os.13561.1.S1_s_at--881--6511Chr03:3673891..3673915 (25 bp)
GATATTGACGCTTCATATAACATGG
LOC_Os03g07234
Target Sequence 
ATGTTCATGTATTGCCAATGTTCCGCTTTTACAGAGGNGCAGAAGGCCGTATCTGTAGCTTCANCTGTNCAATTTCAACT
ATTTATAAGATCAAAGATGCATTGAAAAGGCATGGGNTTCAGCTAGAGAATCTNGGNCCAGATAAGGGCTTGGAGAAATC
AGAACTTCAGAACTCTGATATTGACGCTTCATATAACATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13561.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis