Browse Element(s) Details


Os.27429.1.S1_at

Description gb:AK121310.1
DB_XREF= gi:37990933
TID=Os.27429.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27429 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023093H18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023112E08, full insert sequence.
FL= gb:AK121310.1 gb:AK071501.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0716011/11Kelch motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g07120OsAffx.25002.1.S1_at11/113+3616741..3621573lipase, putative, expressed
LOC_Os03g07120OsAffx.22506.1.A1_at1/113+3616741..3621573lipase, putative, expressed
LOC_Os03g07120OsAffx.13781.1.S1_at1/113+3616741..3621573lipase, putative, expressed
LOC_Os03g07130Os.34701.1.S1_s_at11/113+3626088..3630691ReMembR-H2 protein JR702, putative, expressed
LOC_Os03g07140Os.49681.1.S1_at11/113+3632820..3636250Male sterility protein 2, putative, expressed
LOC_Os03g07150Os.12512.1.S1_at11/113+3636238..3640971Serine/threonine protein phosphatase PP2A-4 catalytic subunit, putative, expressed
LOC_Os03g07150Os.27801.2.A1_x_at2/113+3636238..3640971Serine/threonine protein phosphatase PP2A-4 catalytic subunit, putative, expressed
LOC_Os03g07160Os.27429.1.S1_at11/113+3643751..3649046Kelch motif family protein, expressed
LOC_Os03g07170Os.53485.1.S1_at11/113+3653396..3657425lactose permease, putative, expressed
LOC_Os03g07180Os.6330.1.S1_at11/113+3657403..3659080Late embryogenesis abundant protein, expressed
LOC_Os03g07190Os.28404.1.A1_at11/113+3660211..3662388expressed protein
LOC_Os03g07200Os.20934.1.A1_at1/113+3662283..3664420expressed protein
LOC_Os03g07220OsAffx.25003.1.S1_at11/113+3669116..3673548pentatricopeptide, putative
LOC_Os03g07234Os.13504.1.S1_s_at11/113+3673853..3680697pentatricopeptide, putative
LOC_Os03g07234OsAffx.25004.1.S1_at11/113+3673853..3680697pentatricopeptide, putative
LOC_Os03g07234OsAffx.12761.1.S1_at11/113+3673853..3680697pentatricopeptide, putative
LOC_Os03g07234Os.13561.1.S1_s_at11/113+3673853..3680697pentatricopeptide, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27429.1.S1_at--588--9891Chr03:3648457..3648481 (25 bp)
TACTCAATCTCTCCGGTACCGGAAA
LOC_Os03g07160
Os.27429.1.S1_at--161--2411Chr03:3648479..3648503 (25 bp)
AAAAATCTCATGCTGGCTGCTGGAT
LOC_Os03g07160
Os.27429.1.S1_at--207--2871Chr03:3648522..3648546 (25 bp)
AAGTGGGAGCTTCGGTTGTCTATAA
LOC_Os03g07160
Os.27429.1.S1_at--419--4971Chr03:3648593..3648617 (25 bp)
GCATCGGTGGTTTGTCCAGTGGTAT
LOC_Os03g07160
Os.27429.1.S1_at--842--6531Chr03:3648622..3648646 (25 bp)
GATTTCAGTGTGCTGATGCTTCCTG
LOC_Os03g07160
Os.27429.1.S1_at--777--9771Chr03:3648684..3648708 (25 bp)
TAATGGTTGCATTGGCGGCTGTCAT
LOC_Os03g07160
Os.27429.1.S1_at--85--431Chr03:3648751..3648775 (25 bp)
ATCATCATGTCTATCTTTCTTTCGG
LOC_Os03g07160
Os.27429.1.S1_at--956--3671Chr03:3648769..3648793 (25 bp)
CTTTCGGCTTATTAGGCATGTCAAA
LOC_Os03g07160
Os.27429.1.S1_at--1157--6631Chr03:3648798..3648822 (25 bp)
GTTGTATGATCGTATCAGCCGACTA
LOC_Os03g07160
Os.27429.1.S1_at--168--9831Chr03:3648867..3648891 (25 bp)
TAAAATCCTTGCCTGTTTGTTATGC
LOC_Os03g07160
Os.27429.1.S1_at--267--6891Chr03:3648961..3648985 (25 bp)
GTATCAAATACTCCCTTTGCTTTCT
LOC_Os03g07160
Target Sequence 
TACTCAATCTCTCCGGTACCGGAAAAATCTCATGCTGGCTGCTGGATGCAGCCATGCAGGAGAGGAAGTGGGAGCTTCGG
TTGTCTATAAACCAAGGTGAAATTTTTTGGGGTGTGAGAGTAAGAAATATTCCATAGCATCGGTGGTTTGTCCAGTGGTA
TTCATGATTTCAGTGTGCTGATGCTTCCTGGTTTGGGGTTGAGCTGATACTGCTGATGATACGGCAGTAATGGTTGCATT
GGCGGCTGTCATGTTCTACATTTTCGGATAGGAAGGTGGTCCACCTTCATCCTAATCATCATGTCTATCTTTCTTTCGGC
TTATTAGGCATGTCAAACTGTGTTGTATGATCGTATCAGCCGACTAGAGTAACAAATGAATAAATGTTTTGTTCAACTGT
TTATNCNNNATAAAATCCTTGCCTGTTTGTTATGCNCCAGNACAGTTTTGGAATCTGATTGGTGGATTTAAGGATGTTAT
GTCTGAAAAAGATTTCATAGGCATGTATCAAATACTCCCTTTGCTTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27429.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis