Browse Element(s) Details


Os.12512.1.S1_at

Description gb:AK069884.1
DB_XREF= gi:32979908
TID=Os.12512.1
CNT=28
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.12512 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013102E23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023038E01, full insert sequence.
FL= gb:AK072010.1 gb:AK069884.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0715011/11Serine/threonine protein phosphatase PP2A-4 catalytic subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g07110Os.27089.1.S1_at11/113+3610246..3614636calmodulin-binding family protein, putative, expressed
LOC_Os03g07120OsAffx.25002.1.S1_at11/113+3616741..3621573lipase, putative, expressed
LOC_Os03g07120OsAffx.22506.1.A1_at1/113+3616741..3621573lipase, putative, expressed
LOC_Os03g07120OsAffx.13781.1.S1_at1/113+3616741..3621573lipase, putative, expressed
LOC_Os03g07130Os.34701.1.S1_s_at11/113+3626088..3630691ReMembR-H2 protein JR702, putative, expressed
LOC_Os03g07140Os.49681.1.S1_at11/113+3632820..3636250Male sterility protein 2, putative, expressed
LOC_Os03g07150Os.12512.1.S1_at11/113+3636238..3640971Serine/threonine protein phosphatase PP2A-4 catalytic subunit, putative, expressed
LOC_Os03g07150Os.27801.2.A1_x_at2/113+3636238..3640971Serine/threonine protein phosphatase PP2A-4 catalytic subunit, putative, expressed
LOC_Os03g07160Os.27429.1.S1_at11/113+3643751..3649046Kelch motif family protein, expressed
LOC_Os03g07170Os.53485.1.S1_at11/113+3653396..3657425lactose permease, putative, expressed
LOC_Os03g07180Os.6330.1.S1_at11/113+3657403..3659080Late embryogenesis abundant protein, expressed
LOC_Os03g07190Os.28404.1.A1_at11/113+3660211..3662388expressed protein
LOC_Os03g07200Os.20934.1.A1_at1/113+3662283..3664420expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006470biological_processprotein amino acid dephosphorylation
GO:0009926biological_processauxin polar transport
GO:0000159cellular_componentprotein phosphatase type 2A complex
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005737cellular_componentcytoplasm
GO:0000158molecular_functionprotein phosphatase type 2A activity
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12512.1.S1_at--352--7111Chr03:3636813..3636837 (25 bp)
GTCACCTTGTACTGCGAATTTGCGA
LOC_Os03g07150
Os.12512.1.S1_at--968--4711Chr03:3636761..3636785 (25 bp)
GCTGGACTGTGAAACCTGCGCATAG
LOC_Os03g07150
Os.12512.1.S1_at--39--8151Chr03:3636717..3636741 (25 bp)
GGAACATCAGATCCCTTCGTAAAAC
LOC_Os03g07150
Os.12512.1.S1_at--160--10611Chr03:3636702..3636726 (25 bp)
TTCGTAAAACTTGACCCTCCATTGG
LOC_Os03g07150
Os.12512.1.S1_at--271--7131Chr03:3636642..3636666 (25 bp)
GTCATGCTCATGCAGCGATGCCTGA
LOC_Os03g07150
Os.12512.1.S1_at--688--8211Chr03:3636464..3636488 (25 bp)
GGCAACCTAATCATCTTTCGGTGTA
LOC_Os03g07150
Os.12512.1.S1_at--1144--7711Chr03:3636423..3636447 (25 bp)
GGGTGGTTACCCTGATGTGCTACAG
LOC_Os03g07150
Os.12512.1.S1_at--134--7331Chr03:3636407..3636431 (25 bp)
GTGCTACAGTGCAGTGTTCCATGGC
LOC_Os03g07150
Os.12512.1.S1_at--806--851Chr03:3636387..3636411 (25 bp)
ATGGCACCTTTTTCTCTAGTTGGAT
LOC_Os03g07150
Os.12512.1.S1_at--1025--7991Chr03:3636366..3636390 (25 bp)
GGATGTTTTTCTTCGCATGTATCTG
LOC_Os03g07150
Os.12512.1.S1_at--336--7851Chr03:3636334..3636358 (25 bp)
GGTTTTCAAATTTCGCACTACTCTA
LOC_Os03g07150
Target Sequence 
GTCACCTTGTACTGCGAATTTGCGATAGTCAAATGCTGGTCAGTGATACTTTGCTGGACTGTGAAACCTGCGCATAGGCC
AACCAACAATAACAAGGGAACATCAGATCCCTTCGTAAAACTTGACCCTCCATTGGTCAATGCAAGAGATGCTGCTATCC
TGAAACAAAGTGTCATGCTCATGCAGCGATGCCTGAGTTTTTCAGGTGATAAAAAAGGCCCATCCATCCTCACCCTCTCC
TTTTTAGGCATTTTTACAGAGGAAATCTAGTGGCAAGACTGAACTTCTATTTGTATTTTGTAGCGTAAGCTTGTATCGAT
AGTCTTGTAATTTGTATCATCAATGGCAAGGCAACCTAATCATCTTTCGGTGTAGTATTCCGAATTTTGGGGGTGGTTAC
CCTGATGTGCTACAGTGCAGTGTTCCATGGCACCTTTTTCTCTAGTTGGATGTTTTTCTTCGCATGTATCTGACATTCTG
GTTTTCAAATTTCGCACTACTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12512.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis