Browse Element(s) Details


OsAffx.25002.1.S1_at

Description tigr:9631.m00642
TID=OsAffx.25002.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0712011/11lipase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g07080Os.27493.1.S1_at11/113+3595722..3601316Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os03g07090OsAffx.30774.1.S1_s_at11/113+3603944..3605013hypothetical protein
LOC_Os03g07100Os.4612.1.S1_at10/113+3605503..3607694Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g07100OsAffx.3160.1.S1_at5/113+3605503..3607694Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g07110Os.27089.1.S1_at11/113+3610246..3614636calmodulin-binding family protein, putative, expressed
LOC_Os03g07120OsAffx.25002.1.S1_at11/113+3616741..3621573lipase, putative, expressed
LOC_Os03g07120OsAffx.22506.1.A1_at1/113+3616741..3621573lipase, putative, expressed
LOC_Os03g07120OsAffx.13781.1.S1_at1/113+3616741..3621573lipase, putative, expressed
LOC_Os03g07130Os.34701.1.S1_s_at11/113+3626088..3630691ReMembR-H2 protein JR702, putative, expressed
LOC_Os03g07140Os.49681.1.S1_at11/113+3632820..3636250Male sterility protein 2, putative, expressed
LOC_Os03g07150Os.12512.1.S1_at11/113+3636238..3640971Serine/threonine protein phosphatase PP2A-4 catalytic subunit, putative, expressed
LOC_Os03g07150Os.27801.2.A1_x_at2/113+3636238..3640971Serine/threonine protein phosphatase PP2A-4 catalytic subunit, putative, expressed
LOC_Os03g07160Os.27429.1.S1_at11/113+3643751..3649046Kelch motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25002.1.S1_at--982--951Chr03:3621121..3621145 (25 bp)
AGGACTCGCAGCTCACGCGGATCCA
LOC_Os03g07120
OsAffx.25002.1.S1_at--362--5851Chr03:3621329..3621353 (25 bp)
GACCATCGACGACGTGGCGTTCAAC
LOC_Os03g07120
OsAffx.25002.1.S1_at--282--8031Chr03:3621392..3621416 (25 bp)
GGAGGTCAGGAGGAGCCGCTTCTAC
LOC_Os03g07120
OsAffx.25002.1.S1_at--860--871Chr03:3621423..3621447 (25 bp)
ATGGCCGCCGGCAAGTGAGATCGAT
LOC_Os03g07120
OsAffx.25002.1.S1_at--564--4531Chr03:3621426..3621450 (25 bp)
GCCGCCGGCAAGTGAGATCGATCAA
LOC_Os03g07120
OsAffx.25002.1.S1_at--544--6391Chr03:3621441..3621465 (25 bp)
GATCGATCAACCTGTTCAAGAAGAG
LOC_Os03g07120
OsAffx.25002.1.S1_at--845--2171Chr03:3621478..3621502 (25 bp)
ACACGTAGAGAGTTAGCTTCGGCTG
LOC_Os03g07120
OsAffx.25002.1.S1_at--757--10011Chr03:3621491..3621515 (25 bp)
TAGCTTCGGCTGTGTCAACGGTCAA
LOC_Os03g07120
OsAffx.25002.1.S1_at--797--8671Chr03:3621501..3621525 (25 bp)
TGTGTCAACGGTCAACCACCCAGCT
LOC_Os03g07120
OsAffx.25002.1.S1_at--727--4931Chr03:3621528..3621552 (25 bp)
GCTTGTGTTTGTGCATCGAAATTCG
LOC_Os03g07120
OsAffx.25002.1.S1_at--501--10831Chr03:3621536..3621560 (25 bp)
TTGTGCATCGAAATTCGTGCATGTA
LOC_Os03g07120
Target Sequence 
AGGACTCGCAGCTCACGCGGATCCAGTCCCCCGGCGCCGCCGCCATGTACTGGGAGACCACCATCTCCTCCAGCCTCGCC
GACTACCGCGCCGTCGACGGCGGCGGCGGCGTCCACGTCGCGCACTCCGGCCGCTCCACGGCGCACCTCGCCCGCTTCGG
CGTCGGCGTTCGCGCCGCCCGCGTCGTGACGCGGATGGAGGAGTCGTGGACCATCGACGACGTGGCGTTCAACGTGCCCG
GGCTCGGCCCCGACGCCTTCATCCCGCCCGAGGAGGTCAGGAGGAGCCGCTTCTACGACGCCATGGCCGCCGGCAAGTGA
GATCGATCAACCTGTTCAAGAAGAGAGAAATGGTGTAACACGTAGAGAGTTAGCTTCGGCTGTGTCAACGGTCAACCACC
CAGCTCTGCTTGTGTTTGTGCATCGAAATTCGTGCATGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25002.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis