Browse Element(s) Details


Os.49681.1.S1_at

Description gb:AK121254.1
DB_XREF= gi:37990877
TID=Os.49681.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.49681 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023102A19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023102A19, full insert sequence.
FL= gb:AK121254.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0714011/11Male sterility protein 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g07110Os.27089.1.S1_at11/113+3610246..3614636calmodulin-binding family protein, putative, expressed
LOC_Os03g07120OsAffx.25002.1.S1_at11/113+3616741..3621573lipase, putative, expressed
LOC_Os03g07120OsAffx.22506.1.A1_at1/113+3616741..3621573lipase, putative, expressed
LOC_Os03g07120OsAffx.13781.1.S1_at1/113+3616741..3621573lipase, putative, expressed
LOC_Os03g07130Os.34701.1.S1_s_at11/113+3626088..3630691ReMembR-H2 protein JR702, putative, expressed
LOC_Os03g07140Os.49681.1.S1_at11/113+3632820..3636250Male sterility protein 2, putative, expressed
LOC_Os03g07150Os.12512.1.S1_at11/113+3636238..3640971Serine/threonine protein phosphatase PP2A-4 catalytic subunit, putative, expressed
LOC_Os03g07150Os.27801.2.A1_x_at2/113+3636238..3640971Serine/threonine protein phosphatase PP2A-4 catalytic subunit, putative, expressed
LOC_Os03g07160Os.27429.1.S1_at11/113+3643751..3649046Kelch motif family protein, expressed
LOC_Os03g07170Os.53485.1.S1_at11/113+3653396..3657425lactose permease, putative, expressed
LOC_Os03g07180Os.6330.1.S1_at11/113+3657403..3659080Late embryogenesis abundant protein, expressed
LOC_Os03g07190Os.28404.1.A1_at11/113+3660211..3662388expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009556biological_processmicrosporogenesis
GO:0016627molecular_functionoxidoreductase activity, acting on the CH-CH group of donors
GO:0016628molecular_functionoxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
Os.49681.1.S1_at--662--9931Chr03:3635810..3635829 (20 bp)
TTCTACGGCGGCAGGTTCGACAATG
LOC_Os03g07140
Os.49681.1.S1_at--140--9371Chr03:3635821..3635845 (25 bp)
TCGACAATGGGAACACGGAGGCGCT
LOC_Os03g07140
Os.49681.1.S1_at--119--8051Chr03:3635867..3635891 (25 bp)
GGAGAAGGCGCGGTTCCACTTCGAC
LOC_Os03g07140
Os.49681.1.S1_at--400--3971Chr03:3635877..3635901 (25 bp)
CGGTTCCACTTCGACGTGAGGAGCA
LOC_Os03g07140
Os.49681.1.S1_at--24--8071Chr03:3635896..3635920 (25 bp)
GGAGCATCGAGTGGACGGACTACAT
LOC_Os03g07140
Os.49681.1.S1_at--252--8131Chr03:3635912..3635936 (25 bp)
GGACTACATCACCAACGTGCACATC
LOC_Os03g07140
Os.49681.1.S1_at--528--3911Chr03:3636023..3636047 (25 bp)
CGGCGCCTCCGTTTGAATGGCCAGG
LOC_Os03g07140
Os.49681.1.S1_at--15--611Chr03:3636073..3636097 (25 bp)
ATGCGCGGCGTGTACACTAGGCTAG
LOC_Os03g07140
Os.49681.1.S1_at--1017--10771Chr03:3636102..3636126 (25 bp)
TTGTTAACTTGTTCTGCCGTGGCAG
LOC_Os03g07140
Os.49681.1.S1_at--200--3831Chr03:3636115..3636139 (25 bp)
CTGCCGTGGCAGTCTGACAGATGAT
LOC_Os03g07140
Os.49681.1.S1_at--952--2131Chr03:3636131..3636155 (25 bp)
ACAGATGATCTTTGTGCTGCAGTAA
LOC_Os03g07140
Target Sequence
TTCTACGGCGGCAGGTTCGACAATGGGAACACGGAGGCGCTGATCGGGGAGATGTCGGAGGAGGAGAAGGCGCGGTTCCA
CTTCGACGTGAGGAGCATCGAGTGGACGGACTACATCACCAACGTGCACATCCCGGGGCTCAGGAAGCACGTCATGAAGG
GGAGGGGCGTCGGCGGCGGCAGCGGCGCGTCGTCGTCATCGAACGCCTCGCTGCTCGCCGGCGCCTCCGTTTGAATGGCC
AGGCCGGCGCCGGAGAAGAGGAGGATGCATGCGCGGCGTGTACACTAGGCTAGATTGTTGTTAACTTGTTCTGCCGTGGC
AGTCTGACAGATGATCTTTGTGCTGCAGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49681.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis