Browse Element(s) Details


Os.28404.1.A1_at

Description gb:AK099530.1
DB_XREF= gi:32984739
TID=Os.28404.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28404 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013031J20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013031J20, full insert sequence.
FL= gb:AK099530.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0719011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g07140Os.49681.1.S1_at11/113+3632820..3636250Male sterility protein 2, putative, expressed
LOC_Os03g07150Os.12512.1.S1_at11/113+3636238..3640971Serine/threonine protein phosphatase PP2A-4 catalytic subunit, putative, expressed
LOC_Os03g07150Os.27801.2.A1_x_at2/113+3636238..3640971Serine/threonine protein phosphatase PP2A-4 catalytic subunit, putative, expressed
LOC_Os03g07160Os.27429.1.S1_at11/113+3643751..3649046Kelch motif family protein, expressed
LOC_Os03g07170Os.53485.1.S1_at11/113+3653396..3657425lactose permease, putative, expressed
LOC_Os03g07180Os.6330.1.S1_at11/113+3657403..3659080Late embryogenesis abundant protein, expressed
LOC_Os03g07190Os.28404.1.A1_at11/113+3660211..3662388expressed protein
LOC_Os03g07200Os.20934.1.A1_at1/113+3662283..3664420expressed protein
LOC_Os03g07220OsAffx.25003.1.S1_at11/113+3669116..3673548pentatricopeptide, putative
LOC_Os03g07234Os.13504.1.S1_s_at11/113+3673853..3680697pentatricopeptide, putative
LOC_Os03g07234OsAffx.25004.1.S1_at11/113+3673853..3680697pentatricopeptide, putative
LOC_Os03g07234OsAffx.12761.1.S1_at11/113+3673853..3680697pentatricopeptide, putative
LOC_Os03g07234Os.13561.1.S1_s_at11/113+3673853..3680697pentatricopeptide, putative
LOC_Os03g07250Os.5752.1.S1_s_at11/113+3681052..3683171Cytochrome P450 family protein, expressed
LOC_Os03g07250OsAffx.12762.1.S1_x_at11/113+3681052..3683171Cytochrome P450 family protein, expressed
LOC_Os03g07260OsAffx.12763.1.S1_at11/113+3684278..3685888TPR Domain containing protein
LOC_Os03g07270Os.48500.1.A1_s_at11/113+3686298..3687608expressed protein
LOC_Os03g07270Os.38457.1.S1_s_at11/113+3686298..3687608expressed protein
LOC_Os03g07270OsAffx.3864.1.S1_x_at1/113+3686298..3687608expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28404.1.A1_at--288--7251Chr03:3661826..3661850 (25 bp)
GTGACATTCTACAGGGTGGCGGCCA
LOC_Os03g07190
Os.28404.1.A1_at--1087--10031Chr03:3661874..3662003 (25 bp)
TAGAGGCATCATCGGTTTTCAACAT
LOC_Os03g07190
Os.28404.1.A1_at--532--9611Chr03:3661992..3662011 (20 bp)
TCATCGGTTTTCAACATCTGCCATA
LOC_Os03g07190
Os.28404.1.A1_at--543--2291Chr03:3662012..3662036 (25 bp)
AAATGAAAGCTCTTGCCGTCCTTTT
LOC_Os03g07190
Os.28404.1.A1_at--374--6891Chr03:3662150..3662174 (25 bp)
GTATATTCGTCTAGCTGTTGAAGCA
LOC_Os03g07190
Os.28404.1.A1_at--428--8811Chr03:3662165..3662189 (25 bp)
TGTTGAAGCAAAGGCCCTAGGCCCT
LOC_Os03g07190
Os.28404.1.A1_at--1004--4251Chr03:3662180..3662204 (25 bp)
CCTAGGCCCTGTATACTACGTGGTA
LOC_Os03g07190
Os.28404.1.A1_at--1063--7851Chr03:3662201..3662225 (25 bp)
GGTATGTAGATCCACAATAGCACGT
LOC_Os03g07190
Os.28404.1.A1_at--124--7851Chr03:3662226..3662250 (25 bp)
GGTACATACATCCACAATAGCCTAA
LOC_Os03g07190
Os.28404.1.A1_at--190--5531Chr03:3662275..3662299 (25 bp)
GAAAACATGTCCAATAGCTCGAGAT
LOC_Os03g07190
Os.28404.1.A1_at--912--10531Chr03:3662343..3662362 (20 bp)
TTCTAAATGCTTCAGTTTACGGTGA
LOC_Os03g07190
Target Sequence 
GTGACATTCTACAGGGTGGCGGCCAAGGTTGTGAGGGGATTGCAGAGATAGAGGCATCATCGGTTTTCAACATCTGCCAT
AAAATGAAAGCTCTTGCCGTCCTTTTCCGTCGTGGTAGGACCCCTCCATTGCCTCAAAGCCTTGAGCGNGACTTAAGGGC
AAGAAAGAGATCATTGGAAGNCTAGAGTCTTTNTGATACATAGTATAGAACTTNTAATTGTATATTCGTCTAGCTGTTGA
AGCAAAGGCCCTAGGCCCTGTATACTACGTGGTATGTAGATCCACAATAGCACGTGGTACATACATCCACAATAGCCTAA
GAGGAAAGGAAGTCAAATCTGACAGAAAACATGTCCAATAGCTCGAGATATTAACAATCTCAGTAAATTGATTATTCTTG
CCATTATGTACATTCTAAATGCTTCAGTTTACGGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28404.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis