Browse Element(s) Details


Os.27089.1.S1_at

Description gb:AK066554.1
DB_XREF= gi:32976572
TID=Os.27089.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27089 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013073I08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013073I08, full insert sequence.
FL= gb:AK066554.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0711011/11calmodulin-binding family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g07070OsAffx.25001.1.S1_at11/113+3586043..3587368hypothetical protein
LOC_Os03g07070Os.36749.2.A1_at1/113+3586043..3587368hypothetical protein
LOC_Os03g07070Os.55736.1.S1_at1/113+3586043..3587368hypothetical protein
LOC_Os03g07080Os.27493.1.S1_at11/113+3595722..3601316Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os03g07090OsAffx.30774.1.S1_s_at11/113+3603944..3605013hypothetical protein
LOC_Os03g07100Os.4612.1.S1_at10/113+3605503..3607694Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g07100OsAffx.3160.1.S1_at5/113+3605503..3607694Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g07110Os.27089.1.S1_at11/113+3610246..3614636calmodulin-binding family protein, putative, expressed
LOC_Os03g07120OsAffx.25002.1.S1_at11/113+3616741..3621573lipase, putative, expressed
LOC_Os03g07120OsAffx.22506.1.A1_at1/113+3616741..3621573lipase, putative, expressed
LOC_Os03g07120OsAffx.13781.1.S1_at1/113+3616741..3621573lipase, putative, expressed
LOC_Os03g07130Os.34701.1.S1_s_at11/113+3626088..3630691ReMembR-H2 protein JR702, putative, expressed
LOC_Os03g07140Os.49681.1.S1_at11/113+3632820..3636250Male sterility protein 2, putative, expressed
LOC_Os03g07150Os.12512.1.S1_at11/113+3636238..3640971Serine/threonine protein phosphatase PP2A-4 catalytic subunit, putative, expressed
LOC_Os03g07150Os.27801.2.A1_x_at2/113+3636238..3640971Serine/threonine protein phosphatase PP2A-4 catalytic subunit, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27089.1.S1_at--285--3911Chr03:3610736..3610760 (25 bp)
CTGGACTTCTGCAAGGTGAACCTGT
LOC_Os03g07110
Os.27089.1.S1_at--193--8611Chr03:3610678..3610702 (25 bp)
TGGTGCCGCAGGAGAAGATCCTCCG
LOC_Os03g07110
Os.27089.1.S1_at--1137--2531Chr03:3610646..3610670 (25 bp)
AACTCCAGGATGACCATGAACTCGT
LOC_Os03g07110
Os.27089.1.S1_at--848--8951Chr03:3610630..3610654 (25 bp)
TGAACTCGTACCAGCTCGGGAAGCA
LOC_Os03g07110
Os.27089.1.S1_at--871--1511Chr03:3610609..3610633 (25 bp)
AGCAGCTGTCGCTCCGGTGGACCAC
LOC_Os03g07110
Os.27089.1.S1_at--673--7391Chr03:3610526..3610550 (25 bp)
GTGATGGAGCAGATCAGCCTGACTC
LOC_Os03g07110
Os.27089.1.S1_at--477--1911Chr03:3610375..3610399 (25 bp)
ACGGTGCAGCCTAAAAGTCCTTACT
LOC_Os03g07110
Os.27089.1.S1_at--1003--551Chr03:3610360..3610384 (25 bp)
AGTCCTTACTTTGTGGGCGTATTCA
LOC_Os03g07110
Os.27089.1.S1_at--705--3671Chr03:3610352..3610376 (25 bp)
CTTTGTGGGCGTATTCAGAGTTTCA
LOC_Os03g07110
Os.27089.1.S1_at--471--91Chr03:3610316..3610340 (25 bp)
ATTCGAGCCAATAACCAATCCATGC
LOC_Os03g07110
Os.27089.1.S1_at--945--3171Chr03:3610301..3610325 (25 bp)
CAATCCATGCATCAATTCAGCTAAT
LOC_Os03g07110
Target Sequence 
CTGGACTTCTGCAAGGTGAACCTGTTCCGCGGCGGCGAGGAGGCGGAGGAGGCGGTGGTGGTGCCGCAGGAGAAGATCCT
CCGCCGGCTCAACTCCAGGATGACCATGAACTCGTACCAGCTCGGGAAGCAGCTGTCGCTCCGGTGGACCACCGGCGCCG
GGCCGCGGATCGGCTGCGTCCGCGACTACCCGCCGGAGCTCCAGTTCCGGGTGATGGAGCAGATCAGCCTGACTCCGCGC
GGCGGCGCCGGGCCACTGAGGCTCGGGTCGACGGCGACCCCCCGGCAGAGCCCCTGCGCGCCGCTCCCGTCGCCGGCGCC
GCTTTACGCCGCCGCCGGGACTCCCACCTCGCTGCTGCAGCACGGTGCAGCCTAAAAGTCCTTACTTTGTGGGCGTATTC
AGAGTTTCAGACAGTATAAAATTCGAGCCAATAACCAATCCATGCATCAATTCAGCTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27089.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis