Browse Element(s) Details


OsAffx.25001.1.S1_at

Description tigr:9631.m00636
TID=OsAffx.25001.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0707011/11hypothetical protein
LOC_Os11g196901/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g07020NANA3+3558912..3562217retrotransposon protein, putative, unclassified
LOC_Os03g07030NANA3+3562832..3568987retrotransposon protein, putative, unclassified
LOC_Os03g07040Os.40855.2.S1_x_at6/113+3570109..3571383hypothetical protein
LOC_Os03g07050NANA3+3574337..3579231retrotransposon protein, putative, unclassified
LOC_Os03g07060NANA3+3581167..3581838glycerol-3-phosphate acyltransferase 8, putative
LOC_Os03g07070OsAffx.25001.1.S1_at11/113+3586043..3587368hypothetical protein
LOC_Os03g07070Os.36749.2.A1_at1/113+3586043..3587368hypothetical protein
LOC_Os03g07070Os.55736.1.S1_at1/113+3586043..3587368hypothetical protein
LOC_Os03g07080Os.27493.1.S1_at11/113+3595722..3601316Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os03g07090OsAffx.30774.1.S1_s_at11/113+3603944..3605013hypothetical protein
LOC_Os03g07100Os.4612.1.S1_at10/113+3605503..3607694Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g07100OsAffx.3160.1.S1_at5/113+3605503..3607694Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g07110Os.27089.1.S1_at11/113+3610246..3614636calmodulin-binding family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25001.1.S1_at--866--2832Chr11:11315487..11315866 (25 bp)
AAGTACGGGCTCAACCGCACGGCGT
LOC_Os11g19690
OsAffx.25001.1.S1_at--1142--10451Chr03:3586134..3586158 (25 bp)
TTACCGCCCGCATTTGTAAGGTCTG
LOC_Os03g07070
OsAffx.25001.1.S1_at--475--4531Chr03:3586129..3586153 (25 bp)
GCCCGCATTTGTAAGGTCTGCCCGA
LOC_Os03g07070
OsAffx.25001.1.S1_at--856--4931Chr03:3586125..3586149 (25 bp)
GCATTTGTAAGGTCTGCCCGACAAT
LOC_Os03g07070
OsAffx.25001.1.S1_at--1124--9151Chr03:3586122..3586146 (25 bp)
TTTGTAAGGTCTGCCCGACAATTTA
LOC_Os03g07070
OsAffx.25001.1.S1_at--26--2911Chr03:3586117..3586141 (25 bp)
AAGGTCTGCCCGACAATTTATCATC
LOC_Os03g07070
OsAffx.25001.1.S1_at--409--9491Chr03:3586113..3586137 (25 bp)
TCTGCCCGACAATTTATCATCCCTA
LOC_Os03g07070
OsAffx.25001.1.S1_at--254--4111Chr03:3586107..3586131 (25 bp)
CGACAATTTATCATCCCTACACAGA
LOC_Os03g07070
OsAffx.25001.1.S1_at--536--3131Chr03:3586103..3586127 (25 bp)
AATTTATCATCCCTACACAGAAAGA
LOC_Os03g07070
OsAffx.25001.1.S1_at--1004--10151Chr03:3586099..3586123 (25 bp)
TATCATCCCTACACAGAAAGAAAAC
LOC_Os03g07070
OsAffx.25001.1.S1_at--1024--6791Chr03:3586073..3586097 (25 bp)
GTTATTCTACCCGACCAATTATCAT
LOC_Os03g07070
Target Sequence 
AAGTACGGGCTCAACCGCACGGCGTTCGTGTTCTGGGACGCCTACCACACCTCTGACGCCGCCAACCAGGTCATCGCCGA
CCGCCTCTACGCCGACATGCTTACCGCCCGCATTTGTAAGGTCTGCCCGACAATTTATCATCCCTACACAGAAAGAAAAC
CGTTATTCTACCCGACCAATTATCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25001.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis