Browse Element(s) Details


Os.55736.1.S1_at

Description gb:AK108686.1
DB_XREF= gi:32993895
TID=Os.55736.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55736 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-149-C04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-149-C04, full insert sequence.
FL= gb:AK108686.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1463011/11GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os03g070701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g14590NANA6+8210536..8216646retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g14600NANA6+8216962..8219918retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g14610NANA6+8221479..8223416retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g14620NANA6+8229483..8231112Ribonucleoside-diphosphate reductase small chain, putative, expressed
LOC_Os06g14630Os.55736.1.S1_at11/116+8235903..8237700GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g14640OsAffx.15427.1.S1_at11/116+8237999..8238475Zinc finger, C3HC4 type family protein
LOC_Os06g14650OsAffx.15428.1.S1_at11/116+8240588..8244450Zinc finger, C3HC4 type family protein
LOC_Os06g14660OsAffx.15429.1.S1_at11/116+8246114..8246500hypothetical protein
LOC_Os06g14670Os.55096.1.S1_at11/116+8250039..8251391Myb-like DNA-binding domain containing protein, expressed
LOC_Os06g14670Os.57514.1.S1_x_at1/116+8250039..8251391Myb-like DNA-binding domain containing protein, expressed
LOC_Os06g14680NANA6+8255352..8258661transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55736.1.S1_at--1115--6971Chr06:8237199..8237223 (25 bp)
GTACGGGTTCAAGACGTCGCACACG
LOC_Os06g14630
Os.55736.1.S1_at--362--4471Chr06:8237490..8237514 (25 bp)
GCCTCCAAAGCCTTAGACGTGCAGA
LOC_Os06g14630
Os.55736.1.S1_at--551--2351Chr06:8237496..8237520 (25 bp)
AAAGCCTTAGACGTGCAGACAACAG
LOC_Os06g14630
Os.55736.1.S1_at--877--3994Chr06:8237507..8237531 (25 bp)
CGTGCAGACAACAGATCGATCGGCC
LOC_Os06g14630
Os.55736.1.S1_at--229--2611Chr06:8237548..8237572 (25 bp)
AACGCCGTCGCCTTTTCGTGTGATT
LOC_Os06g14630
Os.55736.1.S1_at--186--10311Chr06:8237561..8237585 (25 bp)
TTTCGTGTGATTCGAGCCCCAGTCA
LOC_Os06g14630
Os.55736.1.S1_at--821--6571Chr06:8237569..8237593 (25 bp)
GATTCGAGCCCCAGTCATATCTGAT
LOC_Os06g14630
Os.55736.1.S1_at--852--7131Chr06:8237582..8237606 (25 bp)
GTCATATCTGATCTCCATTGTCGGA
LOC_Os06g14630
Os.55736.1.S1_at--879--6391Chr06:8237591..8237615 (25 bp)
GATCTCCATTGTCGGATGAGTTAAA
LOC_Os06g14630
Os.55736.1.S1_at--252--6091Chr06:8237639..8237663 (25 bp)
GAGTAGTGTCGCGATTGTTCAACCA
LOC_Os06g14630
Os.55736.1.S1_at--480--8771Chr06:8237654..8237678 (25 bp)
TGTTCAACCAACGTTTTCCGAGTCA
LOC_Os06g14630
Target Sequence 
GTACGGGTTCAAGACGTCGCACACGTCGTGCTGCGACGTGGACACGACGGTGGGCGGGCTGTGCCTGCCGACGGCGCAGC
TCTGCGACGACCGCACGGCGTTCGTGTTCTGGGACGCCTACCACACCTCCGACGCTGCCAACCAGGTCATCGCCGACCGC
CTCTACGCCGACATGGTGAGCGCCGGCGCCGTACAGGGGAACGGGAACGCCACCACCGCCGCCGCCGCCTCCACCCCCGC
GCCTCGCGTCGTCGTGGGCGGCGGCGCGTCGCCGTCGACCCACGCCGCGCCGCCTCCAAAGCCTTAGACGTGCAGACAAC
AGATCGATCGGCCGCCGTTGCGCCGGCACAACGCCGTCGCCTTTTCGTGTGATTCGAGCCCCAGTCATATCTGATCTCCA
TTGTCGGATGAGTTAAACAACAAGTGTTTGATGAAATGATGAGTAGTGTCGCGATTGTTCAACCAACGTTTTCCGAGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55736.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis