Browse Element(s) Details


Os.55096.1.S1_at

Description gb:AK107483.1
DB_XREF= gi:32992692
TID=Os.55096.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55096 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-129-C06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-129-C06, full insert sequence.
FL= gb:AK107483.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1467011/11Myb-like DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g14620NANA6+8229483..8231112Ribonucleoside-diphosphate reductase small chain, putative, expressed
LOC_Os06g14630Os.55736.1.S1_at11/116+8235903..8237700GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g14640OsAffx.15427.1.S1_at11/116+8237999..8238475Zinc finger, C3HC4 type family protein
LOC_Os06g14650OsAffx.15428.1.S1_at11/116+8240588..8244450Zinc finger, C3HC4 type family protein
LOC_Os06g14660OsAffx.15429.1.S1_at11/116+8246114..8246500hypothetical protein
LOC_Os06g14670Os.55096.1.S1_at11/116+8250039..8251391Myb-like DNA-binding domain containing protein, expressed
LOC_Os06g14670Os.57514.1.S1_x_at1/116+8250039..8251391Myb-like DNA-binding domain containing protein, expressed
LOC_Os06g14680NANA6+8255352..8258661transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g14690NANA6+8267311..8267880transposon protein, putative, unclassified
LOC_Os06g14700OsAffx.27639.1.S1_at11/116+8271684..8272220Myb-like DNA-binding domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55096.1.S1_at--808--8071Chr06:8250883..8250907 (25 bp)
GGAGCAGGAGCCTTCGCCGTTGATC
LOC_Os06g14670
Os.55096.1.S1_at--742--9331Chr06:8250896..8250920 (25 bp)
TCGCCGTTGATCGAGCCGCACGAGA
LOC_Os06g14670
Os.55096.1.S1_at--165--8071Chr06:8251054..8251078 (25 bp)
GGAGCCCATGTACATGTTCGGCATG
LOC_Os06g14670
Os.55096.1.S1_at--1029--1811Chr06:8251173..8251197 (25 bp)
ACGCCAGCTTCGACGATCAAGACGT
LOC_Os06g14670
Os.55096.1.S1_at--201--2771Chr06:8251191..8251215 (25 bp)
AAGACGTCTGGATCATCTGACGCGA
LOC_Os06g14670
Os.55096.1.S1_at--800--471Chr06:8251205..8251229 (25 bp)
ATCTGACGCGATCCACATAGATCAA
LOC_Os06g14670
Os.55096.1.S1_at--387--3571Chr06:8251220..8251244 (25 bp)
CATAGATCAACTCTCATCTTCTTCT
LOC_Os06g14670
Os.55096.1.S1_at--177--9511Chr06:8251247..8251271 (25 bp)
TCTCGCGGATTCCTAACTAGCGTAG
LOC_Os06g14670
Os.55096.1.S1_at--417--10631Chr06:8251297..8251321 (25 bp)
TTCCCAATCTTTTCTTGGTTAGAAT
LOC_Os06g14670
Os.55096.1.S1_at--1037--2111Chr06:8251326..8251350 (25 bp)
ACATGGTCATGGTTGATGCACCGAA
LOC_Os06g14670
Os.55096.1.S1_at--286--6651Chr06:8251337..8251361 (25 bp)
GTTGATGCACCGAATGTTTGACAAA
LOC_Os06g14670
Target Sequence 
GGAGCAGGAGCCTTCGCCGTTGATCGAGCCGCACGAGATCACCGCGCCACCGCCGGCGGCCGCGGCCGAGGCCGCCACGA
GCAACTGCTCTGTTTCCCCTGCTTCGGTGCTCTCCCCGTCCTGCTCCTCGTCGGCGTCGGCTGCCTCGGCGGTGGACGTG
GCGGAGTGGCCGGAGCCCATGTACATGTTCGGCATGGATGGCATCATGGACGTCGGCTGGAACGGCCTCATCTCCGGCGC
CGGCGTGGACGTCGACGTCGACGTCGACCCGTTCGACCATTACTACCACGACGCCAGCTTCGACGATCAAGACGTCTGGA
TCATCTGACGCGATCCACATAGATCAACTCTCATCTTCTTCTTCTCTCGCGGATTCCTAACTAGCGTAGTAGCTTAGCTT
CCCATGTGTTTTTTTTCCCAATCTTTTCTTGGTTAGAATGCATACATGGTCATGGTTGATGCACCGAATGTTTGACAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55096.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis