Browse Element(s) Details


OsAffx.3160.1.S1_at

Description tigr:9631.m00640
TID=OsAffx.3160.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Ribosomal protein S28e, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g071005/11Protease inhibitor/seed storage/LTP family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g07060NANA3+3581167..3581838glycerol-3-phosphate acyltransferase 8, putative
LOC_Os03g07070OsAffx.25001.1.S1_at11/113+3586043..3587368hypothetical protein
LOC_Os03g07070Os.36749.2.A1_at1/113+3586043..3587368hypothetical protein
LOC_Os03g07070Os.55736.1.S1_at1/113+3586043..3587368hypothetical protein
LOC_Os03g07080Os.27493.1.S1_at11/113+3595722..3601316Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os03g07090OsAffx.30774.1.S1_s_at11/113+3603944..3605013hypothetical protein
LOC_Os03g07100Os.4612.1.S1_at10/113+3605503..3607694Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g07100OsAffx.3160.1.S1_at5/113+3605503..3607694Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g07110Os.27089.1.S1_at11/113+3610246..3614636calmodulin-binding family protein, putative, expressed
LOC_Os03g07120OsAffx.25002.1.S1_at11/113+3616741..3621573lipase, putative, expressed
LOC_Os03g07120OsAffx.22506.1.A1_at1/113+3616741..3621573lipase, putative, expressed
LOC_Os03g07120OsAffx.13781.1.S1_at1/113+3616741..3621573lipase, putative, expressed
LOC_Os03g07130Os.34701.1.S1_s_at11/113+3626088..3630691ReMembR-H2 protein JR702, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0031225cellular_componentanchored to membrane
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3160.1.S1_at--1072--3831Chr03:3606672..3606769 (25 bp)
CTGCTCCAGATCATGTAGTTCTACA
LOC_Os03g07100
OsAffx.3160.1.S1_at--283--6931Chr03:3606759..3606783 (25 bp)
GTAGTTCTACAAATTACTGACCATG
LOC_Os03g07100
OsAffx.3160.1.S1_at--732--3131Chr03:3606770..3606794 (25 bp)
AATTACTGACCATGATCCGTACTAC
LOC_Os03g07100
OsAffx.3160.1.S1_at--369--5851Chr03:3606777..3606801 (25 bp)
GACCATGATCCGTACTACATAGTGG
LOC_Os03g07100
OsAffx.3160.1.S1_at--1162--9831Chr03:3606789..3606813 (25 bp)
TACTACATAGTGGAATTTACGGCAG
LOC_Os03g07100
OsAffx.3160.1.S1_at--779--8491NONE
TGGAATTTACGGCAGTGACTAATCT
NONE
OsAffx.3160.1.S1_at--950--9891NONE
TACGGCAGTGACTAATCTACCGATC
NONE
OsAffx.3160.1.S1_at--943--1111NONE
AGTGACTAATCTACCGATCGAAACC
NONE
OsAffx.3160.1.S1_at--446--3031NONE
AATGCCTGCTACCTTCATGTTGCCA
NONE
OsAffx.3160.1.S1_at--944--4271Chr03:3608167..3608188 (22 bp)
CCTGCTACCTTCATGTTGCCAAGAA
NONE
OsAffx.3160.1.S1_at--836--4851Chr03:3608167..3608191 (25 bp)
GCTACCTTCATGTTGCCAAGAAAAA
NONE
Target Sequence 
CTGCTCCAGATCATGTAGTTCTACAAATTACTGACCATGATCCGTACTACATAGTGGAATTTACGGCAGTGACTAATCTA
CCGATCGAAACCAAGAACACGGGATTGGATGGAGCCAGATCAATTAGTGGGCGATTATATTGGACAATGCCTGCTACCTT
CATGTTGCCAAGAAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3160.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis