Browse Element(s) Details


OsAffx.22506.1.A1_at

Description gb:NM_186210.1
DB_XREF= gi:34899505
TID=OsAffx.22506.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0483E09.8 (P0483E09.8), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g071201/11lipase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g07080Os.27493.1.S1_at11/113+3595722..3601316Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os03g07090OsAffx.30774.1.S1_s_at11/113+3603944..3605013hypothetical protein
LOC_Os03g07100Os.4612.1.S1_at10/113+3605503..3607694Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g07100OsAffx.3160.1.S1_at5/113+3605503..3607694Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g07110Os.27089.1.S1_at11/113+3610246..3614636calmodulin-binding family protein, putative, expressed
LOC_Os03g07120OsAffx.25002.1.S1_at11/113+3616741..3621573lipase, putative, expressed
LOC_Os03g07120OsAffx.22506.1.A1_at1/113+3616741..3621573lipase, putative, expressed
LOC_Os03g07120OsAffx.13781.1.S1_at1/113+3616741..3621573lipase, putative, expressed
LOC_Os03g07130Os.34701.1.S1_s_at11/113+3626088..3630691ReMembR-H2 protein JR702, putative, expressed
LOC_Os03g07140Os.49681.1.S1_at11/113+3632820..3636250Male sterility protein 2, putative, expressed
LOC_Os03g07150Os.12512.1.S1_at11/113+3636238..3640971Serine/threonine protein phosphatase PP2A-4 catalytic subunit, putative, expressed
LOC_Os03g07150Os.27801.2.A1_x_at2/113+3636238..3640971Serine/threonine protein phosphatase PP2A-4 catalytic subunit, putative, expressed
LOC_Os03g07160Os.27429.1.S1_at11/113+3643751..3649046Kelch motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22506.1.A1_at--161--1731Chr07:1597400..1597424 (25 bp)
ACCTAACTAGGAAATTGGCAGAACT
NONE
OsAffx.22506.1.A1_at--350--5431Chr07:1597380..1597404 (25 bp)
GAACTGATCCCCAAACCAAAAGGAT
NONE
OsAffx.22506.1.A1_at--625--6311Chr07:1597358..1597382 (25 bp)
GATGACGACTTGAAGCAAAGAGGAT
NONE
OsAffx.22506.1.A1_at--1040--6551Chr07:1597336..1597360 (25 bp)
GATTACAGGAGCATACCAGCTACCC
NONE
OsAffx.22506.1.A1_at--476--9971Chr07:1597323..1597347 (25 bp)
TACCAGCTACCCCTGATCCGAAGAA
NONE
OsAffx.22506.1.A1_at--1145--9951Chr07:1597316..1597340 (25 bp)
TACCCCTGATCCGAAGAAATCCAAG
NONE
OsAffx.22506.1.A1_at--232--1531Chr07:1597240..1597264 (25 bp)
AGCAGGGCTGTCGATCGAATGAGCA
NONE
OsAffx.22506.1.A1_at--949--8711Chr07:1597232..1597256 (25 bp)
TGTCGATCGAATGAGCAGGCAAGCT
NONE
OsAffx.22506.1.A1_at--835--1551Chr07:1597211..1597235 (25 bp)
AGCTTCGGCCGCGTGTGAGTACTCC
NONE
OsAffx.22506.1.A1_at--19--7391Chr07:1597197..1597221 (25 bp)
GTGAGTACTCCCTGGCGGAGCCAGT
NONE
OsAffx.22506.1.A1_at--511--8352Chr03:3617852..3618098 (25 bp)
GGCGGCGCGGCGGAATGGTTTGCTC
LOC_Os03g07120
Target Sequence 
ACCTAACTAGGAAATTGGCAGAACTGATCCCCAAACCAAAAGGATGACGACTTGAAGCAAAGAGGATTACAGGAGCATAC
CAGCTACCCCTGATCCGAAGAAATCCAAGGAGGGCGGCCTGCCGCGGAGGGCGTCGCCGTCGTGCCCCGCAGGCGACGCC
AGCAGGGCTGTCGATCGAATGAGCAGGCAAGCTTCGGCCGCGTGTGAGTACTCCCTGGCGGAGCCAGTGCGTCGAGGGAG
GCAGTGGGCGGCCGCCGGCCGGCGAAGCGGATAGGCGGCGGCGCGGCGGAATGGTTTGCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22506.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis